YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16804253
Organism:	Listeria monocytogenes EGD-e
Length:	407 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16804253.

Description	E-value	Query Range	Subject Range
gi\|47093739, gi\|... - gi\|47093739\|ref\|ZP_00231490.1\| ABC transporter, permease protein [Listeria monocytogenes str. 4b H78...	446.0	[0..1]	[407..1]
gi\|254825222 - gi\|254825222\|ref\|ZP_05230223.1\| ABC transporter, permease protein [Listeria monocytogenes FSL J1-194... gi\|46881719, gi\|... - gi\|46908448\|ref\|YP_014837.1\| ABC transporter, permease protein [Listeria monocytogenes str. 4b F2365... gi\|255522367 - gi\|255522367\|ref\|ZP_05389604.1\| ABC transporter, permease protein [Listeria monocytogenes FSL J1-175... gi\|254992114 - gi\|254992114\|ref\|ZP_05274304.1\| ABC transporter, permease protein [Listeria monocytogenes FSL J2-064... gi\|254878169 - gi\|254878169\|ref\|ZP_05250879.1\| ABC transporter, permease protein [Listeria monocytogenes FSL J2-071... gi\|133726533, gi... - gi\|153168107\|ref\|ZP_01928138.1\| ABC transporter, permease protein [Listeria monocytogenes FSL N1-017... gi\|254931673, gi... - gi\|254931673\|ref\|ZP_05265032.1\| ABC transporter, permease protein [Listeria monocytogenes HPB2262], ...	442.0	[0..3]	[407..1]
gi\|25365319, gi\|... - pir\|\|AI1721 ABC transporter (membrane protein) homolog lin2317 [imported] - Listeria innocua (strain... gi\|16801381 - gi\|16801381\|ref\|NP_471649.1\| hypothetical protein lin2317 [Listeria innocua Clip11262]	437.0	[0..1]	[407..1]
gi\|29342746, gi\|... - gi\|29375286\|ref\|NP_814439.1\| hypothetical protein EF0689 [Enterococcus faecalis V583], gi\|29342746\|g...	375.0	[0..10]	[405..4]
gi\|69244414, gi\|... - gi\|69244414\|ref\|ZP_00602830.1\| ABC transporter EcsB [Enterococcus faecium DO], gi\|68196355\|gb\|EAN107...	367.0	[0..9]	[407..3]
ECSB_BACSU - Protein ecsB OS=Bacillus subtilis GN=ecsB PE=4 SV=1 ECSB_BACSU - Protein EcsB OS=Bacillus subtilis (strain 168) GN=ecsB PE=4 SV=1 gi\|221313167 - gi\|221313167\|ref\|ZP_03594972.1\| ABC transporter membrane protein [Bacillus subtilis subsp. subtilis ... gi\|221318090 - gi\|221318090\|ref\|ZP_03599384.1\| ABC transporter membrane protein [Bacillus subtilis subsp. subtilis ... gi\|221322365 - gi\|221322365\|ref\|ZP_03603659.1\| ABC transporter membrane protein [Bacillus subtilis subsp. subtilis ...	361.0	[0..1]	[404..1]
gi\|254758605 - gi\|254758605\|ref\|ZP_05210632.1\| ABC transporter, permease protein EscB [Bacillus anthracis str. Aust... gi\|254753507 - gi\|254753507\|ref\|ZP_05205543.1\| ABC transporter, permease protein EscB [Bacillus anthracis str. Voll... gi\|254740167 - gi\|254740167\|ref\|ZP_05197859.1\| ABC transporter, permease protein EscB [Bacillus anthracis str. Krug... gi\|254734188 - gi\|254734188\|ref\|ZP_05191901.1\| ABC transporter, permease protein EscB [Bacillus anthracis str. West... gi\|165871863, gi... - gi\|165871863\|ref\|ZP_02216506.1\| ABC transporter, permease protein EscB [Bacillus anthracis str. A048... gi\|254725561 - gi\|254725561\|ref\|ZP_05187343.1\| ABC transporter, permease protein EscB [Bacillus anthracis str. A105... gi\|167529188, gi... - gi\|167635360\|ref\|ZP_02393674.1\| ABC transporter, permease protein EscB [Bacillus anthracis str. A044... gi\|254682772 - gi\|254682772\|ref\|ZP_05146633.1\| ABC transporter, permease protein EscB [Bacillus anthracis str. CNEV... gi\|167640187, gi... - gi\|167640187\|ref\|ZP_02398453.1\| ABC transporter, permease protein EscB [Bacillus anthracis str. A019... gi\|229266172, gi... - gi\|229601764\|ref\|YP_002865600.1\| ABC transporter, permease protein EscB [Bacillus anthracis str. A02... gi\|170667948, gi... - gi\|170688053\|ref\|ZP_02879265.1\| ABC transporter, permease protein EscB [Bacillus anthracis str. A046... gi\|227007829, gi... - gi\|227816098\|ref\|YP_002816107.1\| ABC transporter, permease protein EscB [Bacillus anthracis str. CDC... gi\|170707664, gi... - gi\|170707664\|ref\|ZP_02898116.1\| ABC transporter, permease protein EscB [Bacillus anthracis str. A038... gi\|177654210, gi... - gi\|177654210\|ref\|ZP_02936183.1\| ABC transporter, permease protein EscB [Bacillus anthracis str. A017... gi\|190562337, gi... - gi\|190566785\|ref\|ZP_03019702.1\| ABC transporter, permease protein EscB [Bacillus anthracis Tsiankovs... gi\|21398981, gi\|... - gi\|65318438\|ref\|ZP_00391397.1\| COG4473: Predicted ABC-type exoprotein transport system, permease com... gi\|49184001, gi\|... - gi\|49184001\|ref\|YP_027253.1\| ABC transporter, permease protein EscB [Bacillus anthracis str. Sterne]... gi\|47526325, gi\|... - gi\|47526325\|ref\|YP_017674.1\| ABC transporter permease [Bacillus anthracis str. 'Ames Ancestor'], gi\|... gi\|30261171, gi\|... - gi\|30261171\|ref\|NP_843548.1\| ABC transporter, permease protein EscB [Bacillus anthracis str. Ames], ...	355.0	[0..5]	[405..1]
gi\|49479803, gi\|... - gi\|49479803\|ref\|YP_035308.1\| ABC transporter, permease [Bacillus thuringiensis serovar konkukian str...	355.0	[0..5]	[405..1]
gi\|23098611, gi\|... - gi\|23098611\|ref\|NP_692077.1\| ABC transporter permease [Oceanobacillus iheyensis HTE831], gi\|22776838...	354.0	[0..4]	[407..1]
gi\|51977737, gi\|... - gi\|52144268\|ref\|YP_082560.1\| ABC transporter, permease [Bacillus cereus E33L], gi\|51977737\|gb\|AAU192...	352.0	[0..5]	[405..1]

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Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMIFDSKAL WKERFSAYTT EVMRYLRYMF NDHLLFVLVI GLGAGIFYYA GWVKTLEPTF  60
   61 PVIPLMVILL TASIAVSPVA TLLKKPDIVY LIVQEKAMDT YFSQAKIASF FMQLYVFVIV 120
  121 LGVCMPMYVE VT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [133-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KVPYSQFFTL FIVLSMLKAW NIYFGWESMK FEEADTTWMF IRVILNAILI YIALIAAPYI  60
   61 SIPLVLVVLA ASYYWLRTKT A

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [214-264]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KVTLRWEYLV DKEEARMNRF YRLVNLFTDV PHLRGTVRRR SYLDFLYQPI P

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.498	N/A	N/A	a.182.1	GatB/YqeY domain
View	Download	0.493	N/A	N/A	a.144.1	PABC (PABP) domain
View	Download	0.454	N/A	N/A	a.8.1	Bacterial immunoglobulin/albumin-binding domains
View	Download	0.444	N/A	N/A	a.60.2	RuvA domain 2-like
View	Download	0.443	N/A	N/A	a.144.1	PABC (PABP) domain
View	Download	0.436	N/A	N/A	a.50.1	Anaphylotoxins (complement system)
View	Download	0.394	N/A	N/A	a.8.1	Bacterial immunoglobulin/albumin-binding domains
View	Download	0.373	N/A	N/A	a.5.1	DNA helicase RuvA subunit, C-terminal domain

Predicted Domain #4

Region A:
Residues: [265-407]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YAKRKTFAYL FSRTFIRTNE YAGLYIRLTV IAVILLVFVQ GFYLSIIFSL LFLYLTGFQF  60
   61 IPMLKHYDAQ IMLRLYPIND RYRHRSFIHF LRILLLAQAL LFSVIGIAQN GTIGGMIILG 120
  121 INLAFVVIFT FLYAPVRMKK MYE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits