YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25517648, gi\|...
Organism:	Listeria monocytogenes
Length:	347 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25517648, gi|....

Description	E-value	Query Range	Subject Range
gi\|153203192, gi... - gi\|254931802\|ref\|ZP_05265161.1\| lipase [Listeria monocytogenes HPB2262], gi\|153203192\|ref\|ZP_0194451... gi\|254993321 - gi\|254993321\|ref\|ZP_05275511.1\| lipase [Listeria monocytogenes FSL J2-064] gi\|47091757, gi\|... - gi\|47091757\|ref\|ZP_00229552.1\| lipase [Listeria monocytogenes str. 4b H7858], gi\|47019768\|gb\|EAL1050...	253.0	[0..1]	[347..1]
gi\|217963753, gi... - gi\|217963753\|ref\|YP_002349431.1\| lipase [Listeria monocytogenes HCC23], gi\|217333023\|gb\|ACK38817.1\| ... gi\|254912646, gi... - gi\|254912646\|ref\|ZP_05262658.1\| lipase [Listeria monocytogenes J2818], gi\|153191609\|ref\|ZP_01938799.... gi\|46908324, gi\|... - gi\|46908324\|ref\|YP_014713.1\| lipase [Listeria monocytogenes str. 4b F2365], gi\|46881595\|gb\|AAT04890.... gi\|254826267 - gi\|254826267\|ref\|ZP_05231268.1\| lipase [Listeria monocytogenes FSL J1-194] gi\|254936973, gi... - gi\|254936973\|ref\|ZP_05268670.1\| lipase [Listeria monocytogenes F6900], gi\|153180115\|ref\|ZP_01933254.... gi\|47015802, gi\|... - gi\|47095798\|ref\|ZP_00233403.1\| lipase [Listeria monocytogenes str. 1/2a F6854], gi\|47015802\|gb\|EAL06... gi\|226224695, gi... - gi\|226224695\|ref\|YP_002758802.1\| lipase [Listeria monocytogenes Clip81459], gi\|225877157\|emb\|CAS0587... gi\|255520761 - gi\|255520761\|ref\|ZP_05387998.1\| lipase [Listeria monocytogenes FSL J1-175] gi\|254899213 - gi\|254899213\|ref\|ZP_05259137.1\| lipase [Listeria monocytogenes J0161]	252.0	[0..1]	[347..1]
gi\|25516971, gi\|... - pir\|\|AG1706 lipases homolog lin2194 [imported] - Listeria innocua (strain Clip11262), gi\|16414707\|e... gi\|16801259 - gi\|16801259\|ref\|NP_471527.1\| hypothetical protein lin2194 [Listeria innocua Clip11262]	249.0	[0..1]	[347..1]
BCHE - butyrylcholinesterase gi\|123980276, gi... - gi\|123995089\|gb\|ABM85146.1\| butyrylcholinesterase [synthetic construct], gi\|123980276\|gb\|ABM81967.1\|...	212.0	[0..27]	[341..49]
gi\|55730793 - gi\|55730793\|emb\|CAH92116.1\| hypothetical protein [Pongo abelii] gi\|197097436 - gi\|197097436\|ref\|NP_001127509.1\| butyrylcholinesterase [Pongo abelii]	212.0	[0..28]	[341..50]
CHLE_MOUSE - Cholinesterase OS=Mus musculus GN=Bche PE=1 SV=2	212.0	[0..25]	[341..48]
gi\|114590210 - gi\|114590210\|ref\|XP_516857.2\| PREDICTED: butyrylcholinesterase [Pan troglodytes]	211.0	[0..28]	[341..91]
CHLE_BOVIN - Cholinesterase OS=Bos taurus GN=BCHE PE=2 SV=2	211.0	[0..25]	[341..47]

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Predicted Domain #1

Region A:
Residues: [1-347]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNTIKWIAI GFAGIILLPL LIVFFIYKKA VGKKDYNPEV LENLDKASQE FVKNTSPLSD  60
   61 VDSRYKYMRL ATKALPSAKD IEIGDVENKK IDGPAGKIPI RIYTPQEDGP FEIIVYYHGG 120
  121 GFVLGGLQTH DAIARKLVQT TGARVVTVDY RLAPENPFPA AVEDAYAALL WVQNHRTSLR 180
  181 AKSSDIIVAG DSVGGNLATV VTQIAKSKGK PNITAQILLY PATDIFSRDA SVLYPSMDEF 240
  241 AEGYVLTKES LDKFFKLYIA NASDRKYDPL VAPIRSKDLV GLPKTFIATA EFDPLRDQGE 300
  301 AYAKKLKDAG VEVFAKRFEK VPHGFMTTNS EATDETYELI SEFLEEK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.39794
Match:	2c7bA
Description:	The Crystal Structure of EstE1, a New Thermophilic and Thermostable Carboxylesterase Cloned from a Metagenomic Library
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits