YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16411532, gi\|...
Organism:	Listeria monocytogenes
Length:	541 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16411532, gi|....

Description	E-value	Query Range	Subject Range
gi\|153191584, gi... - gi\|254912619\|ref\|ZP_05262631.1\| hypothetical protein LmonJ2_07481 [Listeria monocytogenes J2818], gi... gi\|153183543, gi... - gi\|254899240\|ref\|ZP_05259164.1\| hypothetical protein LmonJ_05489 [Listeria monocytogenes J0161], gi\|... gi\|47097476, gi\|... - gi\|47097476\|ref\|ZP_00235019.1\| copper resistance domain protein [Listeria monocytogenes str. 1/2a F6... gi\|254936946 - gi\|254936946\|ref\|ZP_05268643.1\| hypothetical protein LmonF6_07461 [Listeria monocytogenes F6900]	580.0	[0..1]	[541..1]
gi\|46881568, gi\|... - gi\|46908297\|ref\|YP_014686.1\| copper resistance domain-containing protein [Listeria monocytogenes str...	574.0	[0..1]	[541..1]
gi\|16801234 - gi\|16801234\|ref\|NP_471502.1\| hypothetical protein lin2168 [Listeria innocua Clip11262] gi\|16414682, gi\|... - pir\|\|AF1703 copper export protein homolog lin2168 [imported] - Listeria innocua (strain Clip11262), ...	574.0	[0..1]	[541..1]
gi\|47017561, gi\|... - gi\|47094061\|ref\|ZP_00231789.1\| copper resistance domain protein [Listeria monocytogenes str. 4b H785...	566.0	[0..1]	[541..1]
gi\|49184786, gi\|... - gi\|49184786\|ref\|YP_028038.1\| hypothetical protein BAS1774 [Bacillus anthracis str. Sterne], gi\|49178... gi\|47502355, gi\|... - gi\|47527207\|ref\|YP_018556.1\| hypothetical protein GBAA1912 [Bacillus anthracis str. 'Ames Ancestor']... gi\|30261944, gi\|... - gi\|30261944\|ref\|NP_844321.1\| hypothetical protein BA1912 [Bacillus anthracis str. Ames], gi\|30256570...	545.0	[0..4]	[535..1]
gi\|52143504, gi\|... - gi\|52143504\|ref\|YP_083326.1\| copper resistance protein [Bacillus cereus E33L], gi\|51976973\|gb\|AAU185...	540.0	[0..1]	[535..1]
gi\|42736987, gi\|... - gi\|42781066\|ref\|NP_978313.1\| hypothetical protein BCE_1997 [Bacillus cereus ATCC 10987], gi\|42736987...	537.0	[0..4]	[536..1]
gi\|49481166, gi\|... - gi\|49481166\|ref\|YP_036085.1\| copper resistance protein [Bacillus thuringiensis serovar konkukian str...	537.0	[0..4]	[535..1]
gi\|47568311, gi\|... - gi\|47568311\|ref\|ZP_00239013.1\| copper resistance protein [Bacillus cereus G9241], gi\|47555004\|gb\|EAL...	536.0	[0..4]	[535..1]
gi\|228656100, gi... - gi\|229127267\|ref\|ZP_04256263.1\| Copper resistance protein [Bacillus cereus BDRD-Cer4], gi\|228656100\|... gi\|30019980, gi\|... - gi\|30019980\|ref\|NP_831611.1\| copper resistance protein [Bacillus cereus ATCC 14579], gi\|29895525\|gb\|...	528.0	[0..1]	[535..3]

Back

Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLKRVSFF LIILYLLIVP VQHVSAHAYL ENSNPADQSH IQTAPEKVTL VFNEEIEADF  60
   61 PLIEVKDSSG KQVETGKTSV SKKNNHMVEA SLPADLKADV YSVSWRVVSA DGHAVTGIIS 120
  121 FKLGDTKATF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.221849
Match:	1m42A
Description:	Copper resistance protein C (CopC, PcoC)
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [131-286]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QASEVPSSGA DLQISSIQKA ILYIGFSLFI GVLVFGLGLY PRKEQISEKI SGHLKKVTWI  60
   61 ALALLGVALL IQLFVQTSIT TGVSISESFG PSKLAAFLTT KTGYIWISEF VVWLLLAIFT 120
  121 VMMFFKKKQW GWFALLTESA LIGYLIFAKA QNGHAA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [287-426]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASADKIVSIT ADMLHMIAAS VWVGGILVLL FVLPRTGKAR KVWIRFAIVA IIAVASILVS  60
   61 GLLMAVMNIG QMANLFTTNY GKILLFKIGL FILMALLGLG HYIYIKLKNQ QLPFKTILIE 120
  121 LIIGTIILVV ASVLTNVQTP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [427-541]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPSAPKAFDE TIAAEGEKAK INLRVEPATV GQNQFIITFT SADGSAKTDF EQVTITTKST  60
   61 KTDEKSTFQA KLANDTQYFA EGLYFNQTGK WEITVHGLTK DFTDINQTFT TNITQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.865	0.527	response to copper ion	b.60.1	Lipocalins
View	Download	0.745	N/A	N/A	b.60.1	Lipocalins
View	Download	0.724	N/A	N/A	b.61.4	Quinohemoprotein amine dehydrogenase A chain, domain 3
View	Download	0.703	N/A	N/A	b.60.1	Lipocalins
View	Download	0.689	N/A	N/A	b.61.4	Quinohemoprotein amine dehydrogenase A chain, domain 3

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits