YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25514388, gi\|...
Organism:	Listeria monocytogenes
Length:	366 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25514388, gi|....

Description	E-value	Query Range	Subject Range
gi\|254873358 - gi\|254873358\|ref\|ZP_05246068.1\| GTP-binding protein YqeH [Listeria monocytogenes FSL N1-017] gi\|46907719, gi\|... - gi\|46907719\|ref\|YP_014108.1\| GTP-binding protein YqeH [Listeria monocytogenes str. 4b F2365], gi\|468... gi\|225876554, gi... - gi\|226224092\|ref\|YP_002758199.1\| hypothetical protein Lm4b_01501b [Listeria monocytogenes Clip81459]... gi\|153202417, gi... - gi\|254931426\|ref\|ZP_05264785.1\| GTP-binding protein YqeH [Listeria monocytogenes HPB2262], gi\|153202... gi\|217333633, gi... - gi\|217964363\|ref\|YP_002350041.1\| GTPase family protein [Listeria monocytogenes HCC23], gi\|217333633\|...	194.0	[0..1]	[366..1]
gi\|254936493, gi... - gi\|254936493\|ref\|ZP_05268190.1\| GTP-binding protein YqeH [Listeria monocytogenes F6900], gi\|15317954... gi\|153190933, gi... - gi\|254912165\|ref\|ZP_05262177.1\| GTP-binding protein YqeH [Listeria monocytogenes J2818], gi\|15319093... gi\|47095444, gi\|... - gi\|47095444\|ref\|ZP_00233054.1\| GTPase, putative [Listeria monocytogenes str. 1/2a F6854], gi\|4701626... gi\|126943497, gi... - gi\|254898343\|ref\|ZP_05258267.1\| GTP-binding protein YqeH [Listeria monocytogenes J0161], gi\|15318384...	193.0	[0..1]	[366..1]
gi\|16800594 - gi\|16800594\|ref\|NP_470862.1\| GTP-binding protein YqeH [Listeria innocua Clip11262] gi\|16413999, gi\|... - pir\|\|AE1623 hypothetical protein homolog lin1526 [imported] - Listeria innocua (strain Clip11262), g...	193.0	[0..1]	[366..1]
gi\|47093412, gi\|... - gi\|47093412\|ref\|ZP_00231177.1\| GTPase, putative [Listeria monocytogenes str. 4b H7858], gi\|47018191\|...	191.0	[0..1]	[366..6]
gi\|48825489 - ref\|ZP_00286737.1\| COG1161: Predicted GTPases [Enterococcus faecium] gi\|68195629, gi\|... - gi\|69245736\|ref\|ZP_00603602.1\| GTP-binding protein, HSR1-related [Enterococcus faecium DO], gi\|68195...	191.0	[0..1]	[366..1]
gi\|196034517, gi... - gi\|196034517\|ref\|ZP_03101926.1\| GTPase family protein [Bacillus cereus W], gi\|195993059\|gb\|EDX57018.... gi\|190567041, gi... - gi\|190567041\|ref\|ZP_03019957.1\| GTPase family protein [Bacillus anthracis Tsiankovskii-I], gi\|190562... gi\|196024289, gi... - gi\|196044801\|ref\|ZP_03112035.1\| GTPase family protein [Bacillus cereus 03BB108], gi\|196024289\|gb\|EDX... gi\|225866316, gi... - gi\|225866316\|ref\|YP_002751694.1\| GTPase family protein [Bacillus cereus 03BB102], gi\|225786457\|gb\|AC... gi\|196029805, gi... - gi\|196039178\|ref\|ZP_03106484.1\| GTPase family protein [Bacillus cereus NVH0597-99], gi\|196029805\|gb\|... gi\|227817112, gi... - gi\|227817112\|ref\|YP_002817121.1\| GTPase family protein [Bacillus anthracis str. CDC 684], gi\|2270040... gi\|217066660, gi... - gi\|217961825\|ref\|YP_002340395.1\| GTPase family protein [Bacillus cereus AH187], gi\|217066660\|gb\|ACJ8... gi\|228916967, gi... - gi\|228916967\|ref\|ZP_04080528.1\| hypothetical protein bthur0012_41800 [Bacillus thuringiensis serovar... gi\|206745790, gi... - gi\|206976038\|ref\|ZP_03236948.1\| GTPase family protein [Bacillus cereus H3081.97], gi\|206745790\|gb\|ED... gi\|228929380, gi... - gi\|228929380\|ref\|ZP_04092403.1\| hypothetical protein bthur0010_40660 [Bacillus thuringiensis serovar... gi\|228935656, gi... - gi\|228935656\|ref\|ZP_04098470.1\| hypothetical protein bthur0009_41020 [Bacillus thuringiensis serovar... gi\|218536686, gi... - gi\|218905472\|ref\|YP_002453306.1\| GTPase family protein [Bacillus cereus AH820], gi\|218536686\|gb\|ACK8... gi\|228811635, gi... - gi\|228948049\|ref\|ZP_04110334.1\| hypothetical protein bthur0007_41760 [Bacillus thuringiensis serovar... gi\|49481394, gi\|... - gi\|49481394\|ref\|YP_038389.1\| GTP-binding protein YqeH [Bacillus thuringiensis serovar konkukian str.... gi\|228987588, gi... - gi\|228987588\|ref\|ZP_04147704.1\| hypothetical protein bthur0001_42580 [Bacillus thuringiensis serovar... gi\|52141172, gi\|... - gi\|52141172\|ref\|YP_085660.1\| GTP-binding protein YqeH [Bacillus cereus E33L], gi\|51974641\|gb\|AAU1619... gi\|228689999, gi... - gi\|229093405\|ref\|ZP_04224510.1\| hypothetical protein bcere0021_41310 [Bacillus cereus Rock3-42], gi\|... gi\|47778309, gi\|... - gi\|47778309\|ref\|YP_021207.2\| GTP-binding protein YqeH [Bacillus anthracis str. 'Ames Ancestor'], gi\|... gi\|228659588, gi... - gi\|229123874\|ref\|ZP_04253067.1\| hypothetical protein bcere0016_41600 [Bacillus cereus 95/8201], gi\|2... gi\|49181156, gi\|... - gi\|49187229\|ref\|YP_030481.1\| GTP-binding protein YqeH [Bacillus anthracis str. Sterne], gi\|49181156\|... gi\|228642351, gi... - gi\|229141073\|ref\|ZP_04269615.1\| hypothetical protein bcere0013_41670 [Bacillus cereus BDRD-ST26], gi... gi\|30264407, gi\|... - gi\|30264407\|ref\|NP_846784.1\| GTP-binding protein YqeH [Bacillus anthracis str. Ames], gi\|30259065\|gb... gi\|229157950, gi... - gi\|229157950\|ref\|ZP_04286022.1\| hypothetical protein bcere0010_41300 [Bacillus cereus ATCC 4342], gi... gi\|42783462, gi\|... - gi\|42783462\|ref\|NP_980709.1\| GTP-binding protein YqeH [Bacillus cereus ATCC 10987], gi\|42739391\|gb\|A... gi\|229186575, gi... - gi\|229186575\|ref\|ZP_04313736.1\| hypothetical protein bcere0004_41180 [Bacillus cereus BGSC 6E1], gi\|... gi\|47569331, gi\|... - gi\|47569331\|ref\|ZP_00240015.1\| GTPase of unknown function [Bacillus cereus G9241], gi\|47554002\|gb\|EA... gi\|118479501, gi... - gi\|118479501\|ref\|YP_896652.1\| GTP-binding protein YqeH [Bacillus thuringiensis str. Al Hakam], gi\|11... gi\|229198463, gi... - gi\|229198463\|ref\|ZP_04325167.1\| hypothetical protein bcere0001_39910 [Bacillus cereus m1293], gi\|228... gi\|21402381, gi\|... - gi\|65321707\|ref\|ZP_00394666.1\| COG1161: Predicted GTPases [Bacillus anthracis str. A2012], ref\|NP_65... gi\|229265883, gi... - gi\|229601475\|ref\|YP_002868625.1\| GTPase family protein [Bacillus anthracis str. A0248], gi\|229265883... gi\|254684092 - gi\|254684092\|ref\|ZP_05147952.1\| GTP-binding protein YqeH [Bacillus anthracis str. CNEVA-9066] gi\|254721926 - gi\|254721926\|ref\|ZP_05183715.1\| GTP-binding protein YqeH [Bacillus anthracis str. A1055] gi\|254741477 - gi\|254741477\|ref\|ZP_05199164.1\| GTP-binding protein YqeH [Bacillus anthracis str. Kruger B] gi\|254750916 - gi\|254750916\|ref\|ZP_05202955.1\| GTP-binding protein YqeH [Bacillus anthracis str. Vollum] gi\|254757756 - gi\|254757756\|ref\|ZP_05209783.1\| GTP-binding protein YqeH [Bacillus anthracis str. Australia 94] gi\|167634670, gi... - gi\|167634670\|ref\|ZP_02392990.1\| GTPase family protein [Bacillus anthracis str. A0442], gi\|167530122\|... gi\|165873260, gi... - gi\|165873260\|ref\|ZP_02217870.1\| GTPase family protein [Bacillus anthracis str. A0488], gi\|164711019\|... gi\|170668646, gi... - gi\|170687451\|ref\|ZP_02878668.1\| GTPase family protein [Bacillus anthracis str. A0465], gi\|170668646\|... gi\|167638624, gi... - gi\|167638624\|ref\|ZP_02396900.1\| GTPase family protein [Bacillus anthracis str. A0193], gi\|167513472\|... gi\|177653312, gi... - gi\|177653312\|ref\|ZP_02935564.1\| GTPase family protein [Bacillus anthracis str. A0174], gi\|172081594\|... gi\|170707440, gi... - gi\|170707440\|ref\|ZP_02897894.1\| GTPase family protein [Bacillus anthracis str. A0389], gi\|170127684\|...	189.0	[0..1]	[366..1]
gi\|228792290, gi... - gi\|228967402\|ref\|ZP_04128435.1\| hypothetical protein bthur0004_42030 [Bacillus thuringiensis serovar... gi\|228818152, gi... - gi\|228941502\|ref\|ZP_04104052.1\| hypothetical protein bthur0008_41400 [Bacillus thuringiensis serovar... gi\|228778687, gi... - gi\|228981027\|ref\|ZP_04141329.1\| hypothetical protein bthur0002_41890 [Bacillus thuringiensis Bt407],... gi\|228974432, gi... - gi\|228974432\|ref\|ZP_04135000.1\| hypothetical protein bthur0003_41860 [Bacillus thuringiensis serovar... gi\|75761260, gi\|... - gi\|75761260\|ref\|ZP_00741242.1\| GTP-binding protein [Bacillus thuringiensis serovar israelensis ATCC ... gi\|228902861, gi... - gi\|228902861\|ref\|ZP_04067004.1\| hypothetical protein bthur0014_40310 [Bacillus thuringiensis IBL 422... gi\|218541005, gi... - gi\|218899503\|ref\|YP_002447914.1\| GTPase family protein [Bacillus cereus G9842], gi\|218541005\|gb\|ACK9...	189.0	[0..1]	[366..1]
gi\|163864288, gi... - gi\|89206303\|ref\|ZP_01184863.1\| GTP-binding protein, HSR1-related [Bacillus weihenstephanensis KBAB4]... gi\|228717186, gi... - gi\|229062034\|ref\|ZP_04199359.1\| hypothetical protein bcere0026_41060 [Bacillus cereus AH603], gi\|228... gi\|228747716, gi... - gi\|229013556\|ref\|ZP_04170689.1\| hypothetical protein bmyco0001_39650 [Bacillus mycoides DSM 2048], g... gi\|229169083, gi... - gi\|229169083\|ref\|ZP_04296798.1\| hypothetical protein bcere0007_40350 [Bacillus cereus AH621], gi\|228... gi\|229135161, gi... - gi\|229135161\|ref\|ZP_04263961.1\| hypothetical protein bcere0014_40630 [Bacillus cereus BDRD-ST196], g...	187.0	[0..1]	[366..1]
gi\|227554296, gi... - gi\|227554296\|ref\|ZP_03984343.1\| GTP-binding protein [Enterococcus faecalis HH22], gi\|227176586\|gb\|EE... gi\|29377339, gi\|... - gi\|29377339\|ref\|NP_816493.1\| GTP-binding protein YqeH [Enterococcus faecalis V583], gi\|29344806\|gb\|A...	184.0	[0..1]	[366..1]
gi\|89150625, gi\|... - gi\|89201415\|ref\|ZP_01180156.1\| GTP-binding protein, HSR1-related [Bacillus cereus subsp. cytotoxis N...	184.0	[0..1]	[366..1]

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Predicted Domain #1

Region A:
Residues: [1-366]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEEVRCIGC GAVIQTEDPD KIGYAPKSSL NNEQVICKRC FRLKHYNEIQ DVALTDDDFL  60
   61 RILNQISSKQ ALIVYVVDIF DFDGSWLPGL PRFAGSNPVL LVGNKEDVLP KSLKRDKLTR 120
  121 WMRTRAKEQG LAATDVVLVS AEKGHGFDTL LEKIDELRNG QDVYVVGCTN VGKSTLINRI 180
  181 IKQASGENNV ITTSQFPGTT LDKIEIPLAD GNVLVDTPGI INHHQMAHFI DTTTLKAITP 240
  241 KKEVKPAVFQ LNEEQTLFLG ALARLDYVSG GRKSLVVYVS NNLPIHRTKL EKAEALYEKQ 300
  301 AGLVLQPPTE EDMKTLPKLV PYSFTVKEKA DIVFSGLGWV TIPEGGAKVT AWVPEGVSAT 360
  361 IRTSLV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.69897
Match:	2hjgA
Description:	No description for 2hjgA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits