YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25307019, gi\|...
Organism:	Listeria innocua
Length:	148 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25307019, gi|....

Description	E-value	Query Range	Subject Range
GATB_GEOUR - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Geobacter uraniireducens (strain Rf4) ...	149.0	[0..9]	[148..329]
GATB_GEODF - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Geobacter daltonii (strain DSM 22248 /...	147.0	[0..9]	[147..329]
GATB_CARHZ - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Carboxydothermus hydrogenoformans (str...	142.0	[0..1]	[148..323]
gi\|58583749, gi\|... - gi\|58583749\|ref\|YP_202765.1\| hypothetical protein XOO4126 [Xanthomonas oryzae pv. oryzae KACC10331],...	141.0	[0..1]	[148..51]
gi\|28271450, gi\|... - gi\|28378614\|ref\|NP_785506.1\| hypothetical protein lp_1972 [Lactobacillus plantarum WCFS1], gi\|282714... gi\|227856781, gi... - gi\|227894896\|ref\|ZP_04012701.1\| glutaminyl-tRNA synthase b subunit [Lactobacillus plantarum subsp. p...	141.0	[0..1]	[148..1]
gi\|88925125, gi\|... - gi\|88945252\|ref\|ZP_01148466.1\| Glutamyl-tRNA(Gln) amidotransferase B subunit [Desulfotomaculum reduc...	140.0	[0..17]	[147..343]
gi\|98660243 - gi\|98660243\|dbj\|GAA02418.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	140.0	[0..17]	[147..358]
GATB2_SYNAS - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B 2 OS=Syntrophus aciditrophicus (strain SB...	139.0	[0..5]	[148..322]
GATB_GEOSL - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Geobacter sulfurreducens GN=gatB PE=3 ... GATB_GEOSL - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Geobacter sulfurreducens (strain ATCC ...	139.0	[0..23]	[147..347]
GATB_PELPD - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Pelobacter propionicus (strain DSM 237...	138.0	[0..17]	[147..341]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLLDKLNED MKQAMRDKEK EKLSVIRMLK AALQNEAIHQ GVKDLTPDDE VTVISRELKQ  60
   61 RRDSLAEFDK AGRSDLSDKV RSEIVIVEDY APKQLTPEEL ENIVKATIEE VGASSKADFG 120
  121 KVMSAIMPKV KGKADGGAVN QFVKKYLS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.221849
Match:	1ng6A
Description:	Hypothetical protein YqeY
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits