YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25365375, gi\|...
Organism:	Listeria monocytogenes
Length:	186 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25365375, gi|....

Description	E-value	Query Range	Subject Range
gi\|254873604 - gi\|254873604\|ref\|ZP_05246314.1\| probable proton-coupled thiamine transporter YuaJ [Listeria monocyto... gi\|16413941, gi\|... - pir\|\|AC1616 hypothetical protein homolog lin1468 [imported] - Listeria innocua (strain Clip11262), g... gi\|217964423, gi... - gi\|217964423\|ref\|YP_002350101.1\| probable proton-coupled thiamine transporter YuaJ [Listeria monocyt... gi\|16800536 - gi\|16800536\|ref\|NP_470804.1\| hypothetical protein lin1468 [Listeria innocua Clip11262]	219.0	[0..1]	[186..1]
gi\|254879738 - gi\|254879738\|ref\|ZP_05252448.1\| hypothetical protein LmonFSL_11114 [Listeria monocytogenes FSL J2-07... gi\|46880925, gi\|... - gi\|46907657\|ref\|YP_014046.1\| hypothetical protein LMOf2365_1448 [Listeria monocytogenes str. 4b F236... gi\|133735549, gi... - gi\|254932614\|ref\|ZP_05265973.1\| hypothetical protein LmonH_09293 [Listeria monocytogenes HPB2262], g... gi\|47092719, gi\|... - gi\|47092719\|ref\|ZP_00230505.1\| membrane protein, putative [Listeria monocytogenes str. 4b H7858], gi... gi\|254824511 - gi\|254824511\|ref\|ZP_05229512.1\| hypothetical protein LmonFS_05069 [Listeria monocytogenes FSL J1-194... gi\|226224030, gi... - gi\|226224030\|ref\|YP_002758137.1\| hypothetical protein Lm4b_01439 [Listeria monocytogenes Clip81459],...	215.0	[0..1]	[186..1]
gi\|47016201, gi\|... - gi\|47095380\|ref\|ZP_00232990.1\| membrane protein, putative [Listeria monocytogenes str. 1/2a F6854], ...	214.0	[0..1]	[186..29]
gi\|254754443 - gi\|254754443\|ref\|ZP_05206478.1\| probable proton-coupled thiamine transporter YuaJ [Bacillus anthraci... gi\|254757276 - gi\|254757276\|ref\|ZP_05209303.1\| probable proton-coupled thiamine transporter YuaJ [Bacillus anthraci... gi\|167513980, gi... - gi\|167638163\|ref\|ZP_02396441.1\| probable proton-coupled thiamine transporter YuaJ [Bacillus anthraci... gi\|170670197, gi... - gi\|170685733\|ref\|ZP_02876956.1\| probable proton-coupled thiamine transporter YuaJ [Bacillus anthraci... gi\|170129679, gi... - gi\|170705554\|ref\|ZP_02896018.1\| probable proton-coupled thiamine transporter YuaJ [Bacillus anthraci... gi\|177651178, gi... - gi\|177651178\|ref\|ZP_02934009.1\| probable proton-coupled thiamine transporter YuaJ [Bacillus anthraci... gi\|190561772, gi... - gi\|190567268\|ref\|ZP_03020183.1\| probable proton-coupled thiamine transporter YuaJ [Bacillus anthraci... gi\|196033197, gi... - gi\|196033197\|ref\|ZP_03100610.1\| probable proton-coupled thiamine transporter YuaJ [Bacillus cereus W... gi\|218906042, gi... - gi\|218906042\|ref\|YP_002453876.1\| probable proton-coupled thiamine transporter YuaJ [Bacillus cereus ... gi\|49187696, gi\|... - gi\|49187696\|ref\|YP_030949.1\| hypothetical protein BAS4705 [Bacillus anthracis str. Sterne], gi\|49181... gi\|47505514, gi\|... - gi\|47530366\|ref\|YP_021715.1\| hypothetical protein GBAA5066 [Bacillus anthracis str. 'Ames Ancestor']... gi\|30264880, gi\|... - gi\|30264880\|ref\|NP_847257.1\| hypothetical protein BA5066 [Bacillus anthracis str. Ames], gi\|30259555... gi\|164714652, gi... - gi\|165869823\|ref\|ZP_02214481.1\| probable proton-coupled thiamine transporter YuaJ [Bacillus anthraci... gi\|167530852, gi... - gi\|167634051\|ref\|ZP_02392374.1\| probable proton-coupled thiamine transporter YuaJ [Bacillus anthraci... gi\|227004520, gi... - gi\|227817607\|ref\|YP_002817616.1\| probable proton-coupled thiamine transporter YuaJ [Bacillus anthrac... gi\|229266087, gi... - gi\|229601679\|ref\|YP_002869085.1\| probable proton-coupled thiamine transporter YuaJ [Bacillus anthrac... gi\|21402858, gi\|... - gi\|65322178\|ref\|ZP_00395137.1\| COG3859: Predicted membrane protein [Bacillus anthracis str. A2012], ... gi\|254687620 - gi\|254687620\|ref\|ZP_05151476.1\| probable proton-coupled thiamine transporter YuaJ [Bacillus anthraci... gi\|254725186 - gi\|254725186\|ref\|ZP_05186969.1\| probable proton-coupled thiamine transporter YuaJ [Bacillus anthraci... gi\|254736924 - gi\|254736924\|ref\|ZP_05194630.1\| probable proton-coupled thiamine transporter YuaJ [Bacillus anthraci... gi\|254741959 - gi\|254741959\|ref\|ZP_05199646.1\| probable proton-coupled thiamine transporter YuaJ [Bacillus anthraci...	208.0	[0..1]	[183..1]
gi\|51974161, gi\|... - gi\|52140692\|ref\|YP_086137.1\| thiamine transporter [Bacillus cereus E33L], gi\|51974161\|gb\|AAU15711.1\|...	207.0	[0..1]	[183..1]
gi\|29898436, gi\|... - gi\|30022877\|ref\|NP_834508.1\| thiamine transporter [Bacillus cereus ATCC 14579], gi\|29898436\|gb\|AAP11...	207.0	[0..1]	[183..1]
gi\|49332927, gi\|... - gi\|49481371\|ref\|YP_038856.1\| thiamine transporter [Bacillus thuringiensis serovar konkukian str. 97-...	205.0	[0..1]	[183..1]
gi\|47555289, gi\|... - gi\|47567986\|ref\|ZP_00238692.1\| membrane protein, putative [Bacillus cereus G9241], gi\|47555289\|gb\|EA...	205.0	[0..1]	[183..1]
gi\|42784013, gi\|... - gi\|42784013\|ref\|NP_981260.1\| hypothetical protein BCE_4967 [Bacillus cereus ATCC 10987], gi\|42739943...	204.0	[0..1]	[183..1]
gi\|74493624, gi\|... - gi\|75758858\|ref\|ZP_00738970.1\| Thiamine transporter [Bacillus thuringiensis serovar israelensis ATCC...	202.0	[0..1]	[183..11]

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Predicted Domain #1

Region A:
Residues: [1-186]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNKRLIILL ECAIFAAVAM VLSFIPLDIG SSFSISLGMI PMYVIAIRRG FWAAGFAGLL  60
   61 WGLLHFLTGK AYILMPSQAI IEYILAFSFI AFSGVFSKQV RSNLAANQLK KAIEWAWGTM 120
  121 IIGGLARYFW HYVAGVLFWG AYAFQGWGAQ LFSIVMNGAS CLGTVLVSGI IISILLKTSP 180
  181 KLFLPK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	87.21467
Match:	PF09515.1
Description:	No description for PF09515.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits