YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|47095960, gi\|...
Organism:	Listeria monocytogenes serotype 1/2a str. F6854
Length:	472 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|47095960, gi|....

Description	E-value	Query Range	Subject Range
gi\|52348807, gi\|... - gi\|52786305\|ref\|YP_092134.1\| 6-phosphogluconate dehydrogenase [Bacillus licheniformis ATCC 14580], g...	517.0	[0..1]	[469..1]
gi\|221323828 - gi\|221323828\|ref\|ZP_03605122.1\| 6-phosphogluconate dehydrogenase [Bacillus subtilis subsp. subtilis ... 6PGD_BACSU - 6-phosphogluconate dehydrogenase, NADP(+)-dependent, decarboxylating OS=Bacillus subtilis (strain 16... gi\|221319552 - gi\|221319552\|ref\|ZP_03600846.1\| 6-phosphogluconate dehydrogenase [Bacillus subtilis subsp. subtilis ... gi\|221314629 - gi\|221314629\|ref\|ZP_03596434.1\| 6-phosphogluconate dehydrogenase [Bacillus subtilis subsp. subtilis ... 6PGD2_BACSU - 6-phosphogluconate dehydrogenase, decarboxylating 2 OS=Bacillus subtilis GN=yqjI PE=1 SV=4	516.0	[0..1]	[469..1]
gi\|89099010, gi\|... - gi\|89099010\|ref\|ZP_01171889.1\| 6-phosphogluconate dehydrogenase [Bacillus sp. NRRL B-14911], gi\|8908...	510.0	[0..1]	[467..1]
gi\|56420879, gi\|... - gi\|56420879\|ref\|YP_148197.1\| 6-phosphogluconate dehydrogenase [Geobacillus kaustophilus HTA426], gi\|...	508.0	[0..1]	[469..1]
gi\|153202216, gi... - gi\|254932561\|ref\|ZP_05265920.1\| 6-phosphogluconate dehydrogenase [Listeria monocytogenes HPB2262], g... gi\|225876439, gi... - gi\|226223977\|ref\|YP_002758084.1\| 6-phosphogluconate dehydrogenase [Listeria monocytogenes Clip81459]... gi\|254852576 - gi\|254852576\|ref\|ZP_05241924.1\| 6-phosphogluconate dehydrogenase [Listeria monocytogenes FSL R2-503] gi\|254824564 - gi\|254824564\|ref\|ZP_05229565.1\| 6-phosphogluconate dehydrogenase [Listeria monocytogenes FSL J1-194] gi\|254880575 - gi\|254880575\|ref\|ZP_05253285.1\| 6-phosphogluconate dehydrogenase [Listeria monocytogenes FSL J2-071] gi\|254873031 - gi\|254873031\|ref\|ZP_05245741.1\| 6-phosphogluconate dehydrogenase [Listeria monocytogenes FSL N1-017] gi\|217333747, gi... - gi\|217964477\|ref\|YP_002350155.1\| 6-phosphogluconate dehydrogenase, decarboxylating [Listeria monocyt... gi\|46880872, gi\|... - gi\|46907604\|ref\|YP_013993.1\| 6-phosphogluconate dehydrogenase [Listeria monocytogenes str. 4b F2365]... gi\|16800481 - gi\|16800481\|ref\|NP_470749.1\| 6-phosphogluconate dehydrogenase [Listeria innocua Clip11262] gi\|25283715, gi\|... - pir\|\|AD1609 6-phosphogluconate dehydrogenase homolog lin1413 [imported] - Listeria innocua (strain C...	506.0	[0..1]	[472..1]
gi\|37525507, gi\|... - gi\|37525507\|ref\|NP_928851.1\| 6-phosphogluconate dehydrogenase [Photorhabdus luminescens subsp. laumo...	497.0	[0..1]	[469..1]
gi\|23097640, gi\|... - gi\|23097640\|ref\|NP_691106.1\| 6-phosphogluconate dehydrogenase [Oceanobacillus iheyensis HTE831], gi\|...	496.0	[0..3]	[467..2]
gi\|50120383, gi\|... - gi\|50120383\|ref\|YP_049550.1\| 6-phosphogluconate dehydrogenase [Pectobacterium atrosepticum SCRI1043]...	494.0	[0..1]	[469..1]
gi\|238720490, gi... - gi\|77962467\|ref\|ZP_00826287.1\| COG0362: 6-phosphogluconate dehydrogenase [Yersinia mollaretii ATCC 4...	492.0	[0..1]	[469..1]
gi\|77975882, gi\|... - gi\|77975882\|ref\|ZP_00831416.1\| COG0362: 6-phosphogluconate dehydrogenase [Yersinia frederiksenii ATC...	491.0	[0..1]	[467..1]

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Predicted Domain #1

Region A:
Residues: [1-472]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKQEIGVIG MGVMGRNLAL NIESRGHTVS IFNRSTEKTK AVMEENADKK LVPTYSLEEF  60
   61 VESLEVPRRI LIMVKAGDAT DMMIEAVKPF LNEGDILIDG GNAFFKDTIR RNKELSEEGF 120
  121 NFIGTGVSGG EEGALKGPSI MPGGQRKAYD LVAPILREIA AVADGEPCVT YIGPDGAGHY 180
  181 VKMVHNGIEY GDMQLIAEAY TILKEIGGLS HDELADVFEE WNNGELDSYL IEITKNILKV 240
  241 KDEETGKPIV DVILDKAGQK GTGKWTSQSA LDLGVPLSLI TESVFARYIS ALKEERVYAS 300
  301 TVLTGPSNYR FEGDKKAFVE SVRRALYFSK IASYAQGFAQ MRAASEEYNW DLQYGEIAKI 360
  361 FRAGCIIRAR FLQKITDAYN QDKNLKNLLL DPYFKDIAHN YQGDLRTVVA EAVKAGIPVP 420
  421 TFTAAISYYD SYRSEVLSAN LIQAQRDYFG AHTYERVDKP GVFHTEWPQV ED

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	133.0
Match:	2iyoA
Description:	No description for 2iyoA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits