YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25513885, gi\|...
Organism:	Listeria monocytogenes
Length:	544 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25513885, gi|....

Description	E-value	Query Range	Subject Range
gi\|47016716, gi\|... - gi\|47094834\|ref\|ZP_00232448.1\| Na/Pi-cotransporter family protein [Listeria monocytogenes str. 1/2a ... gi\|126941917, gi... - gi\|254899000\|ref\|ZP_05258924.1\| hypothetical protein LmonJ_04265 [Listeria monocytogenes J0161], gi\|... gi\|127766160, gi... - gi\|254911512\|ref\|ZP_05261524.1\| hypothetical protein LmonJ2_01860 [Listeria monocytogenes J2818], gi... gi\|153178911, gi... - gi\|254935838\|ref\|ZP_05267535.1\| hypothetical protein LmonF6_01865 [Listeria monocytogenes F6900], gi...	473.0	[0..1]	[544..1]
gi\|46880325, gi\|... - gi\|46907059\|ref\|YP_013448.1\| Na/Pi-cotransporter family protein [Listeria monocytogenes str. 4b F236...	473.0	[0..1]	[544..1]
gi\|30018962, gi\|... - gi\|30018962\|ref\|NP_830593.1\| Sodium-dependent phosphate transporter [Bacillus cereus ATCC 14579], gi... gi\|229108389, gi... - gi\|229108389\|ref\|ZP_04238006.1\| Na/Pi-cotransporter II-related protein [Bacillus cereus Rock1-15], g...	464.0	[0..3]	[540..2]
gi\|42779954, gi\|... - gi\|42779954\|ref\|NP_977201.1\| Na/Pi-cotransporter family protein [Bacillus cereus ATCC 10987], gi\|427...	461.0	[0..9]	[540..1]
gi\|49183772, gi\|... - gi\|49183772\|ref\|YP_027024.1\| Na/Pi-cotransporter family protein [Bacillus anthracis str. Sterne], gi... gi\|254683015 - gi\|254683015\|ref\|ZP_05146876.1\| Na/Pi-cotransporter family protein [Bacillus anthracis str. CNEVA-90... gi\|47777850, gi\|... - gi\|47777850\|ref\|YP_017421.2\| Na/Pi-cotransporter family protein [Bacillus anthracis str. 'Ames Ances... gi\|229602737, gi... - gi\|229602737\|ref\|YP_002865370.1\| Na/Pi-cotransporter family protein [Bacillus anthracis str. A0248],... gi\|30260929, gi\|... - gi\|30260929\|ref\|NP_843306.1\| Na/Pi-cotransporter family protein [Bacillus anthracis str. Ames], gi\|3... gi\|227816343, gi... - gi\|227816343\|ref\|YP_002816352.1\| Na/Pi-cotransporter family protein [Bacillus anthracis str. CDC 684... gi\|190568815, gi... - gi\|190568815\|ref\|ZP_03021718.1\| Na/Pi-cotransporter family protein [Bacillus anthracis Tsiankovskii-... gi\|254757175 - gi\|254757175\|ref\|ZP_05209203.1\| Na/Pi-cotransporter family protein [Bacillus anthracis str. Australi... gi\|254753261 - gi\|254753261\|ref\|ZP_05205297.1\| Na/Pi-cotransporter family protein [Bacillus anthracis str. Vollum] gi\|254735092 - gi\|254735092\|ref\|ZP_05192803.1\| Na/Pi-cotransporter family protein [Bacillus anthracis str. Western ...	460.0	[0..3]	[540..2]
gi\|49331855, gi\|... - gi\|49480299\|ref\|YP_035041.1\| sodium-dependent phosphate transporter [Bacillus thuringiensis serovar ...	460.0	[0..3]	[540..2]
gi\|47564720, gi\|... - gi\|47564720\|ref\|ZP_00235764.1\| sodium-dependent phosphate transporter [Bacillus cereus G9241], gi\|47...	460.0	[0..9]	[540..1]
gi\|51978010, gi\|... - gi\|52144541\|ref\|YP_082287.1\| sodium-dependent phosphate transporter [Bacillus cereus E33L], gi\|51978...	458.0	[0..3]	[540..2]
gi\|89151560, gi\|... - gi\|89200489\|ref\|ZP_01179242.1\| Na/Pi cotransporter II-related [Bacillus cereus subsp. cytotoxis NVH ...	451.0	[0..5]	[540..4]
gi\|172056893, gi... - gi\|68054453\|ref\|ZP_00538610.1\| Na/Pi cotransporter II-related [Exiguobacterium sibiricum 255-15], gi...	450.0	[0..3]	[541..2]

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Predicted Domain #1

Region A:
Residues: [1-175]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDINIQQMI FQFIGGLGIF LFGIKYMGDG LQMAAGDRLR DILDKYTTNP FMGVLAGILV  60
   61 TVLIQSSSGT TVLTVGLVSA GFMTLKQAIG VIMGANIGTT VTAFIIGIKL SEYSLPIIAV 120
  121 GAVLLFFFKN HKVKNIGQVF FGFGALFYGL DLMGQGMKPL AGMESFHELT AQMST

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	74.958607
Match:	PF02690.6
Description:	No description for PF02690.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [176-316]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPFLGLLIGT IFTAVVQSSS ATIGILQELY GQGAIDLQAA LPVLFGDNIG TTITAVLAAI  60
   61 GASVAAKRAA ATHVIFNLIG AIIFMLILPL FTSLVAYLQG MFGLNPEMTI AVAHGTFNIT 120
  121 NTFIQFWFIG AFAWLVTKLI P

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [317-544]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDDSRIDYKT KHLDTNLIDQ SPGIALEMAR EETLRMADYA KFGLQEARQY LVNRDSKHAE  60
   61 STVQVEEAVN NLDRKITEYL TKISSVALTN NETEEHALML DTVRDIERVG DHMENIVENI 120
  121 DQLIKNKAKM SEEASEQLIE MFELTTANFE RAVKSMHKKD RALAEETILV EKDIDKAERR 180
  181 LRKNHIRRLN EGKCQVVSGI LYIDIVSDLE RIGDHANNIA ESVLELNE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.0
Match:	1t72A
Description:	Crystal structure of phosphate transport system protein phoU from Aquifex aeolicus
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.0245585158032	bayes_pls_golite062009
protein binding	0.0825871089137892	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: