YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16802831
Organism:	Listeria monocytogenes EGD-e
Length:	282 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16802831.

Description	E-value	Query Range	Subject Range
gi\|42782163, gi\|... - gi\|42782163\|ref\|NP_979410.1\| PhzF family phenazine biosynthesis protein [Bacillus cereus ATCC 10987]...	270.0	[0..1]	[282..1]
gi\|30258071, gi\|... - gi\|30263436\|ref\|NP_845813.1\| PhzF family phenazine biosynthesis protein [Bacillus anthracis str. Ame... gi\|21401404, gi\|... - gi\|65320762\|ref\|ZP_00393721.1\| COG0384: Predicted epimerase, PhzC/PhzF homolog [Bacillus anthracis s... gi\|49180211, gi\|... - gi\|49186284\|ref\|YP_029536.1\| PhzF family phenazine biosynthesis protein [Bacillus anthracis str. Ste... gi\|254759112 - gi\|254759112\|ref\|ZP_05211138.1\| phenazine biosynthesis protein, PhzF family [Bacillus anthracis str.... gi\|47551880, gi\|... - gi\|47778175\|ref\|YP_020170.2\| PhzF family phenazine biosynthesis protein [Bacillus anthracis str. 'Am... gi\|254752840 - gi\|254752840\|ref\|ZP_05204876.1\| phenazine biosynthesis protein, PhzF family [Bacillus anthracis str.... gi\|254740727 - gi\|254740727\|ref\|ZP_05198418.1\| phenazine biosynthesis protein, PhzF family [Bacillus anthracis str.... gi\|254738523 - gi\|254738523\|ref\|ZP_05196226.1\| phenazine biosynthesis protein, PhzF family [Bacillus anthracis str.... gi\|254723451 - gi\|254723451\|ref\|ZP_05185239.1\| phenazine biosynthesis protein, PhzF family [Bacillus anthracis str.... gi\|254686052 - gi\|254686052\|ref\|ZP_05149911.1\| phenazine biosynthesis protein, PhzF family [Bacillus anthracis str.... gi\|229604167, gi... - gi\|229604167\|ref\|YP_002867683.1\| phenazine biosynthesis protein, PhzF family [Bacillus anthracis str... gi\|227813689, gi... - gi\|227813689\|ref\|YP_002813698.1\| phenazine biosynthesis protein, PhzF family [Bacillus anthracis str... gi\|172080614, gi... - gi\|177654649\|ref\|ZP_02936473.1\| phenazine biosynthesis protein, PhzF family [Bacillus anthracis str.... gi\|190565036, gi... - gi\|190565036\|ref\|ZP_03017957.1\| phenazine biosynthesis protein, PhzF family [Bacillus anthracis Tsia... gi\|195991869, gi... - gi\|196035568\|ref\|ZP_03102972.1\| phenazine biosynthesis protein, PhzF family [Bacillus cereus W], gi\|... gi\|218538583, gi... - gi\|218904609\|ref\|YP_002452443.1\| phenazine biosynthesis protein, PhzF family [Bacillus cereus AH820]... gi\|164711895, gi... - gi\|165872342\|ref\|ZP_02216978.1\| phenazine biosynthesis protein, PhzF family [Bacillus anthracis str.... gi\|167632549, gi... - gi\|167632549\|ref\|ZP_02390876.1\| phenazine biosynthesis protein, PhzF family [Bacillus anthracis str.... gi\|170689063, gi... - gi\|170689063\|ref\|ZP_02880262.1\| phenazine biosynthesis protein, PhzF family [Bacillus anthracis str.... gi\|170708533, gi... - gi\|170708533\|ref\|ZP_02898974.1\| phenazine biosynthesis protein, PhzF family [Bacillus anthracis str....	265.0	[0..1]	[282..1]
gi\|228900856, gi... - gi\|228900856\|ref\|ZP_04065071.1\| Phenazine biosynthesis protein phzF [Bacillus thuringiensis IBL 4222... gi\|75761107, gi\|... - gi\|75761107\|ref\|ZP_00741102.1\| Phenazine biosynthesis protein phzF [Bacillus thuringiensis serovar i...	263.0	[0..1]	[282..1]
gi\|49479311, gi\|... - gi\|49479311\|ref\|YP_037571.1\| phenazine biosynthesis PhzC/PhzF protein [Bacillus thuringiensis serova...	262.0	[0..1]	[282..1]
gi\|52142052, gi\|... - gi\|52142052\|ref\|YP_084778.1\| phenazine biosynthesis PhzC/PhzF protein [Bacillus cereus E33L], gi\|519...	262.0	[0..1]	[282..1]
gi\|229127663, gi... - gi\|229127663\|ref\|ZP_04256652.1\| Phenazine biosynthesis protein phzF [Bacillus cereus BDRD-Cer4], gi\|... gi\|229144859, gi... - gi\|229144859\|ref\|ZP_04273256.1\| Phenazine biosynthesis protein phzF [Bacillus cereus BDRD-ST24], gi\|... gi\|30020353, gi\|... - gi\|30020353\|ref\|NP_831984.1\| phenazine biosynthesis protein phzF [Bacillus cereus ATCC 14579], gi\|29...	261.0	[0..1]	[282..1]
gi\|254899976, gi... - gi\|254899976\|ref\|ZP_05259900.1\| PhzF family phenazine biosynthesis protein [Listeria monocytogenes J... gi\|127766121, gi... - gi\|254911472\|ref\|ZP_05261484.1\| PhzF family phenazine biosynthesis protein [Listeria monocytogenes J... gi\|47097324, gi\|... - gi\|47097324\|ref\|ZP_00234880.1\| phenazine biosynthesis protein, PhzF family [Listeria monocytogenes s... gi\|254935798, gi... - gi\|254935798\|ref\|ZP_05267495.1\| PhzF family phenazine biosynthesis protein [Listeria monocytogenes F...	256.0	[0..1]	[281..1]
gi\|47017824, gi\|... - gi\|47093799\|ref\|ZP_00231546.1\| phenazine biosynthesis protein, PhzF family [Listeria monocytogenes s... gi\|254992678 - gi\|254992678\|ref\|ZP_05274868.1\| hypothetical protein LmonocytoFSL_06161 [Listeria monocytogenes FSL ... gi\|254931170, gi... - gi\|254931170\|ref\|ZP_05264529.1\| hypothetical protein LmonH_02022 [Listeria monocytogenes HPB2262], g...	254.0	[0..1]	[274..1]
gi\|46907020, gi\|... - gi\|46907020\|ref\|YP_013409.1\| PhzF family phenazine biosynthesis protein [Listeria monocytogenes str....	254.0	[0..1]	[274..1]
gi\|16799856 - gi\|16799856\|ref\|NP_470124.1\| hypothetical protein lin0782 [Listeria innocua Clip11262] gi\|25516315, gi\|... - pir\|\|AF1530 conserved hypothetical protein homolog lin0782 [imported] - Listeria innocua (strain Cli...	253.0	[0..1]	[282..1]

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Predicted Domain #1

Region A:
Residues: [1-282]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDISVYVASA FSKNNIGGNK AGVVLNEPTL TNTQKMAIAK QLGFAETAFL TESNCADYKL  60
   61 EYFTPKEEID LCGHATIGTF AILMHLNKIH KSQYTIETNS GVLTITIKDG TIFMEQNQPT 120
  121 FYETIPANNL TGCFDLNLLN THYPIQIVST GLKDILVPLK SEADLYTLEP NFEEVKKVSK 180
  181 HYEVVGMHLY TFSDDRIICR NFAPLFDINE EAATGTSNGA LACYLYQNQY LQKELYVFEQ 240
  241 GHSLHSPSEI LVKLDVNVHS EIARVYVGGN GYYCETKYLS IE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.69897
Match:	1sdjA
Description:	X-RAY STRUCTURE OF YDDE_ECOLI NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET ET25.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.00848565859536	bayes_pls_golite062009
amino-acid racemase activity	0.0628393252100677	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: