YRC Public Data Repository - Protein Structure Prediction

Protein:	INLA_LISMO
Organism:	Listeria monocytogenes EGD-e
Length:	800 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for INLA_LISMO.

Description	E-value	Query Range	Subject Range
gi\|71912406 - gi\|71912406\|gb\|AAZ53235.1\| InlA [Listeria monocytogenes]	482.0	[0..1]	[800..1]
gi\|254932755, gi... - gi\|254932755\|ref\|ZP_05266114.1\| internalin A [Listeria monocytogenes HPB2262], gi\|153200929\|ref\|ZP_0... gi\|130774785, gi... - gi\|223006810\|gb\|ACM69362.1\| internalin A [Listeria monocytogenes], gi\|223006804\|gb\|ACM69359.1\| inter... INLA_LISMF - Internalin-A OS=Listeria monocytogenes serotype 4b (strain F2365) GN=inlA PE=3 SV=1	480.0	[0..1]	[800..1]
gi\|153189778, gi... - gi\|254913677\|ref\|ZP_05263689.1\| internalin A [Listeria monocytogenes J2818], gi\|153189778\|ref\|ZP_019... gi\|153185276, gi... - gi\|254900622\|ref\|ZP_05260546.1\| internalin A [Listeria monocytogenes J0161], gi\|153185276\|ref\|ZP_019... gi\|223006794, gi... - gi\|223006794\|gb\|ACM69354.1\| internalin A [Listeria monocytogenes], gi\|223006792\|gb\|ACM69353.1\| inter... gi\|254937992, gi... - gi\|254937992\|ref\|ZP_05269689.1\| internalin A [Listeria monocytogenes F6900], gi\|153178454\|ref\|ZP_019... gi\|47096455, gi\|... - gi\|47096455\|ref\|ZP_00234048.1\| internalin A precursor [Listeria monocytogenes str. 1/2a F6854], gi\|4...	472.0	[0..1]	[800..1]
gi\|47019095, gi\|... - gi\|47092503\|ref\|ZP_00230292.1\| internalin A [Listeria monocytogenes str. 4b H7858], gi\|47019095\|gb\|E... gi\|194239406, gi... - gi\|223006808\|gb\|ACM69361.1\| internalin A [Listeria monocytogenes], gi\|223006800\|gb\|ACM69357.1\| inter...	470.0	[0..1]	[800..1]

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Predicted Domain #1

Region A:
Residues: [1-95]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKKRYVWLK SILVAILVFG SGVWINTSNG TNAQAATITQ DTPINQIFTD TALAEKMKTV  60
   61 LGKTNVTDTV SQTDLDQVTT LQADRLGIKS IDGVE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.09691
Match:	1o6sA
Description:	Internalin A
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [96-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YLNNLTQINF SNNQLTDITP LKNLTKLVDI LMNNNQIADI TPLANLTNLT GLTLFNNQIT  60
   61 DIDPLKNLTN LNRLELSSNT ISDISALSGL TSLQQLSFGN QVTDLKPLAN LTTLERLD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.522879
Match:	1wwlA
Description:	Crystal structure of CD14
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [214-705]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ISSNKVSDIS VLAKLTNLES LIATNNQISD ITPLGILTNL DELSLNGNQL KDIGTLASLT  60
   61 NLTDLDLANN QISNLAPLSG LTKLTELKLG ANQISNISPL AGLTALTNLE LNENQLEDIS 120
  121 PISNLKNLTY LTLYFNNISD ISPVSSLTKL QRLFFYNNKV SDVSSLANLT NINWLSAGHN 180
  181 QISDLTPLAN LTRITQLGLN DQAWTNAPVN YKANVSIPNT VKNVTGALIA PATISDGGSY 240
  241 TEPDITWNLP SYTNEVSYTF SQPVTIGKGT TTFSGTVTQP LKAIFNVKFH VDGKETTKEV 300
  301 EAGNLLTEPA KPVKEGHTFV GWFDAQTGGT KWNFSTDKMP TNDINLYAQF SINSYTATFD 360
  361 NDGVTTSQTV DYQGLLQEPT APTKEGYTFK GWYDAKTGGD KWDFATSKMP AKNITLYAQY 420
  421 SANSYTATFD VDGKSTTQAV DYQGLLKEPK APTKAGYTFK GWYDEKTDGK KWDFATDKMP 480
  481 ANDITLYAQF TK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.39794
Match:	1m9sA
Description:	Internalin B; Internalin B, C-terminal domains
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [706-800]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPVAPPTTGG NTPPTTNNGG NTTPPSANIP GSDTSNTSTG NSASTTSTMN AYDPYNSKEA  60
   61 SLPTTGDSDN ALYLLLGLLA VGTAMALTKK ARASK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits