YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25309253, gi\|...
Organism:	Listeria monocytogenes
Length:	482 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25309253, gi|....

Description	E-value	Query Range	Subject Range
gi\|47096696, gi\|... - gi\|47096696\|ref\|ZP_00234282.1\| Iron permease FTR1 family family [Listeria monocytogenes str. 1/2a F6... gi\|153189701, gi... - gi\|254913611\|ref\|ZP_05263623.1\| hypothetical protein LmonJ2_12469 [Listeria monocytogenes J2818], gi... gi\|153185211, gi... - gi\|254900688\|ref\|ZP_05260612.1\| hypothetical protein LmonJ_12769 [Listeria monocytogenes J0161], gi\|... gi\|133733692, gi... - gi\|254938058\|ref\|ZP_05269755.1\| hypothetical protein LmonF6_13059 [Listeria monocytogenes F6900], gi...	528.0	[0..1]	[482..1]
gi\|16799461 - gi\|16799461\|ref\|NP_469729.1\| hypothetical protein lin0384 [Listeria innocua Clip11262] gi\|25309255, gi\|... - pir\|\|AI1480 conserved hypothetical protein homolog lin0384 [imported] - Listeria innocua (strain Cli...	506.0	[0..1]	[469..1]
YWBL_BACSU - Uncharacterized membrane protein ywbL OS=Bacillus subtilis GN=ywbL PE=3 SV=1 gi\|16080879, gi\|... - gi\|2636363\|emb\|CAB15854.1\| ywbL [Bacillus subtilis subsp. subtilis str. 168], gi\|16080879\|ref\|NP_391...	425.0	[0..13]	[463..5]
gi\|89104730 - gi\|89104730\|ref\|ZP_01177265.1\| COG0672: High-affinity Fe2+/Pb2+ permease [Yersinia pestis biovar Ori... gi\|108807320, gi... - gi\|108807320\|ref\|YP_651236.1\| hypothetical protein YPA_1324 [Yersinia pestis Antiqua], gi\|108779233\|... gi\|229894617, gi... - gi\|229894617\|ref\|ZP_04509798.1\| putative high-affinity iron permease [Yersinia pestis Pestoides A], ... gi\|229693683, gi... - gi\|229897346\|ref\|ZP_04512502.1\| putative high-affinity iron permease [Yersinia pestis biovar Orienta... gi\|77634269, gi\|... - gi\|77634269\|ref\|ZP_00796373.1\| COG0672: High-affinity Fe2+/Pb2+ permease [Yersinia pestis Angola], g... gi\|152959108, gi... - gi\|77629022\|ref\|ZP_00791608.1\| COG0672: High-affinity Fe2+/Pb2+ permease [Yersinia pseudotuberculosi... gi\|167401064, gi... - gi\|167401064\|ref\|ZP_02306567.1\| iron permease, FTR1 family [Yersinia pestis biovar Antiqua str. UG05... gi\|167466532 - gi\|167466532\|ref\|ZP_02331236.1\| iron permease, FTR1 family protein [Yersinia pestis FV-1] gi\|149366122, gi... - gi\|149366122\|ref\|ZP_01888157.1\| putative membrane protein [Yersinia pestis CA88-4125], gi\|149292535\|... gi\|22126254, gi\|... - gi\|22126254\|ref\|NP_669677.1\| integral membrane protein [Yersinia pestis KIM], gi\|21959226\|gb\|AAM8592... gi\|4106605, gi\|1... - gi\|4106605\|emb\|CAA21360.1\| yp19 [Yersinia pestis], pir\|\|AH0236 probable membrane protein YPO1941 [im... gi\|218929055, gi... - gi\|218929055\|ref\|YP_002346930.1\| hypothetical protein YPO1941 [Yersinia pestis CO92], gi\|16122187\|re... gi\|45436360, gi\|... - gi\|45441499\|ref\|NP_993038.1\| hypothetical protein YP_1685 [Yersinia pestis biovar Microtus str. 9100...	400.0	[0..25]	[482..130]
Q66B41\|Q66B41_YERPS - High-affinity Fe2+/Pb2+ permease precursor - Yersinia pseudotuberculosis gi\|169751015, gi... - gi\|170024481\|ref\|YP_001720986.1\| iron permease FTR1 [Yersinia pseudotuberculosis YPIII], gi\|16975101... gi\|51589547, gi\|... - gi\|51596265\|ref\|YP_070456.1\| high-affinity Fe2+/Pb2+ permease [Yersinia pseudotuberculosis IP 32953]... gi\|186895299, gi... - gi\|186895299\|ref\|YP_001872411.1\| iron permease FTR1 [Yersinia pseudotuberculosis PB1/+], gi\|18669832...	399.0	[0..25]	[482..130]
gi\|12720708, gi\|... - gi\|15602318\|ref\|NP_245390.1\| hypothetical protein PM0453 [Pasteurella multocida subsp. multocida str...	390.0	[0..41]	[480..157]
gi\|77973240, gi\|... - gi\|77973240\|ref\|ZP_00828790.1\| COG0672: High-affinity Fe2+/Pb2+ permease [Yersinia frederiksenii ATC...	385.0	[0..41]	[482..156]
gi\|77963670 - gi\|77963670\|ref\|ZP_00827478.1\| COG0672: High-affinity Fe2+/Pb2+ permease [Yersinia mollaretii ATCC 4...	372.0	[0..25]	[482..111]
gi\|150392877, gi... - gi\|90583131\|ref\|ZP_01238891.1\| conserved hypothetical protein [Staphylococcus aureus subsp. aureus J... gi\|253726887, gi... - gi\|253735087\|ref\|ZP_04869252.1\| OFeT family oxidase-dependent iron (Fe2+) transporter [Staphylococcu... gi\|255005140 - gi\|255005140\|ref\|ZP_05143741.2\| hypothetical protein SauraM_01695 [Staphylococcus aureus subsp. aure... gi\|148266832, gi... - gi\|90586700\|ref\|ZP_01242392.1\| conserved hypothetical protein [Staphylococcus aureus subsp. aureus J... gi\|253316554 - gi\|253316554\|ref\|ZP_04839767.1\| hypothetical protein SauraC_10495 [Staphylococcus aureus subsp. aure... gi\|269201993\|ref... - hypothetical protein SAAV_0313 [Staphylococcus aureus subsp. aureus ED98]	372.0	[0..29]	[475..117]
gi\|156720808, gi... - gi\|156978673\|ref\|YP_001440932.1\| hypothetical protein SAHV_0342 [Staphylococcus aureus subsp. aureus... gi\|25506124 - pir\|\|B89800 conserved hypothetical protein SA0333 [imported] - Staphylococcus aureus (strain N315) gi\|15923335, gi\|... - gi\|15923335\|ref\|NP_370869.1\| hypothetical protein SAV0345 [Staphylococcus aureus subsp. aureus Mu50]... gi\|15926046, gi\|... - gi\|15926046\|ref\|NP_373579.1\| hypothetical protein SA0333 [Staphylococcus aureus subsp. aureus N315],...	372.0	[0..29]	[475..118]

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Predicted Domain #1

Region A:
Residues: [1-311]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHRLLGRVM LLLGALGVIL TMSFSYVAAA EKPNIDKPVK GLEQTEKAIV ADDYNKAKDA  60
   61 FQEDKLWWSE NKQVVKEKSY DLAGQIDRQI AEISLGILNN DKQQAMDGIT SLHNLLKTYQ 120
  121 DGTYTDNEGN TNITLSSYIA KLTATKKLVD EKEWAKAATQ IQDLKTEWLA VEGDVVSQSQ 180
  181 AAYDNTERDL MLLDAYINDP AKQAKTADVL DGMTEELKPF ADVTYTWFDA ALIPFREGLE 240
  241 ALLIIATLLT YTKRTKTRTA KRWIIGGTAA GLVVSLALGM IVAFWLSALA FGDNNNLING 300
  301 WAGLIASIMM L

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.992
Match:	2a01A
Description:	Crystal Structure of Lipid-free Human Apolipoprotein A-I
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [312-482]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YVSYWLHRNS DITRWNNYME GKSNQALSNG KMISFAFLAF LAILREGLET VVFLIGMVGR  60
   61 MSNFELLMGI LAGLGVLLII AFVMLRYSVH IPVKPFFMIS SAIVFYLCFK FMGSGIHSLQ 120
  121 LAGVIPTSVE DYLPSIPALS IYPSWYSFLP QVLLVIFGLT ILIKQQIKKK S

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits