YRC Public Data Repository - Protein Structure Prediction

Protein:	CCDS5204.1_1
Organism:	Chlorocebus aethiops
Length:	86 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCDS5204.1_1.

Description	E-value	Query Range	Subject Range
gi\|76780360 - gi\|76780360\|gb\|AAI06479.1\| MGC131202 protein [Xenopus laevis] gi\|62858321, gi\|... - gi\|62858321\|ref\|NP_001016441.1\| splicing factor 3b, subunit 5, 10kDa [Xenopus (Silurana) tropicalis]...	2.0E-42	[1..86]	[1..86]
gi\|49904601, gi\|... - gi\|50540016\|ref\|NP_001002478.1\| splicing factor 3b, subunit 5 [Danio rerio], gi\|49904601\|gb\|AAH76334...	4.0E-42	[1..85]	[1..85]
gi\|186910269, gi... - gi\|186910269\|ref\|NP_001119564.1\| splicing factor 3b, subunit 5 [Rattus norvegicus], gi\|149039562\|gb\|... tr\|G3H6X4\|G3H6X4... - Splicing factor 3B subunit 5 OS=Cricetulus griseus GN=I79_006094 PE=4 SV=1 SF3B5_MOUSE - Splicing factor 3B subunit 5 OS=Mus musculus GN=Sf3b5 PE=1 SV=1	4.0E-41	[1..86]	[1..86]
gi\|68051667 - gi\|68051667\|gb\|AAY85097.1\| IP03424p [Drosophila melanogaster]	3.0E-40	[1..85]	[6..90]
gi\|110755305 - gi\|110755305\|ref\|XP_001120310.1\| PREDICTED: similar to Probable splicing factor 3B subunit 5 (SF3b5)...	4.0E-40	[1..85]	[1..85]
gi\|108877467, gi... - gi\|157114059\|ref\|XP_001657963.1\| hypothetical protein AaeL_AAEL006688 [Aedes aegypti], gi\|108877467\|...	8.0E-40	[1..85]	[1..85]
gi\|116117165, gi... - gi\|118792994\|ref\|XP_320622.3\| ENSANGP00000021330 [Anopheles gambiae str. PEST], gi\|116117165\|gb\|EAA0...	8.0E-40	[1..85]	[5..89]

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Predicted Domain #1

Region A:
Residues: [1-86]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDRYTIHSQ LEHLQSKYIG TGHADTTKWE WLVNQHRDSY CSYMGHFDLL NYFAIAENES  60
   61 KARVRFNLME KMLQPCGPPA DKPEEN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	62.376751
Match:	PF07189.2
Description:	No description for PF07189.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits