YRC Public Data Repository - Protein Structure Prediction

Protein:	CCDS4406.1_1
Organism:	Chlorocebus aethiops
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCDS4406.1_1.

Description	E-value	Query Range	Subject Range
gi\|55846688 - gi\|55846688\|gb\|AAV67348.1\| synuclein beta [Macaca fascicularis]	2.0E-40	[1..132]	[1..132]
gi\|148223263, gi... - gi\|54648558\|gb\|AAH84970.1\| LOC495448 protein [Xenopus laevis], gi\|148223263\|ref\|NP_001088570.1\| hypo...	1.0E-36	[1..134]	[1..134]
gi\|114603550, gi... - gi\|114603550\|ref\|XP_001136728.1\| PREDICTED: beta-synuclein isoform 2 [Pan troglodytes], gi\|114603548...	3.0E-35	[1..121]	[1..121]
gi\|77404215, gi\|... - gi\|77404215\|ref\|NP_542955.2\| synuclein, beta [Rattus norvegicus], gi\|56269649\|gb\|AAH87579.1\| Synucle...	2.0E-34	[1..121]	[1..121]
gi\|45382765, gi\|... - gi\|7689260\|gb\|AAF67728.1\|AF253512_1 alpha-synuclein [Gallus gallus], gi\|45382765\|ref\|NP_990004.1\| sy...	4.0E-34	[1..134]	[1..143]
SYUA_SAGLB - Alpha-synuclein OS=Saguinus labiatus GN=SNCA PE=3 SV=1	6.0E-34	[1..134]	[1..140]
gi\|109658365, gi... - gi\|115496344\|ref\|NP_001068828.1\| synuclein, beta [Bos taurus], gi\|109658365\|gb\|AAI18379.1\| Synuclein...	3.0E-33	[1..118]	[1..118]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVFMKGLSM AKEGVVAAAE KTKQGVTEAA EKTKEGVLYV GSKTREGVVQ GVASVAEKTK  60
   61 EQASHLGGAV FSGAGNIAAA TGLVKREEFP TDLKPEEVAQ EAAEEPLIEP LMEPEGESYE 120
  121 DPPQEEYQEY EPEA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.0
Match:	1xq8A
Description:	Human micelle-bound alpha-synuclein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits