YRC Public Data Repository - Protein Structure Prediction

Protein:	CCDS3176.1_1
Organism:	Chlorocebus aethiops
Length:	185 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCDS3176.1_1.

Description	E-value	Query Range	Subject Range
gi\|89266766, gi\|... - gi\|89266766\|emb\|CAJ81804.1\| signal sequence receptor, gamma (translocon-associated protein gamma) [X...	9.0E-85	[1..185]	[1..185]
SSRG_BOVIN - Translocon-associated protein subunit gamma OS=Bos taurus GN=SSR3 PE=2 SV=1	1.0E-84	[1..185]	[1..185]
SSRG_MOUSE - Translocon-associated protein subunit gamma OS=Mus musculus GN=Ssr3 PE=1 SV=1 gi\|73990466 - gi\|73990466\|ref\|XP_534317.2\| PREDICTED: similar to signal sequence receptor, gamma isoform 1 [Canis ... SSRG_RAT - Translocon-associated protein subunit gamma OS=Rattus norvegicus GN=Ssr3 PE=1 SV=2 tr\|M3X2V2\|M3X2V2... - Signal sequence receptor subunit 3 OS=Felis catus GN=SSR3 PE=4 SV=1	2.0E-84	[1..185]	[1..185]
SSRG_PONAB - Translocon-associated protein subunit gamma OS=Pongo abelii GN=SSR3 PE=2 SV=1 SSRG_PONPY - Translocon-associated protein subunit gamma - Pongo pygmaeus (Orangutan)	3.0E-84	[1..185]	[1..185]
gi\|148235194, gi... - gi\|27735441\|gb\|AAH41301.1\| MGC53595 protein [Xenopus laevis], gi\|148235194\|ref\|NP_001080316.1\| hypot...	3.0E-84	[1..185]	[1..185]
SSRG_RAT - (Q08013) Translocon-associated protein, gamma subunit (TRAP-gamma) (Signal sequence receptor gamma s...	5.0E-84	[1..185]	[1..185]
gi\|30584003, gi\|... - gi\|60654059\|gb\|AAX29722.1\| signal sequence receptor gamma [synthetic construct], gi\|30584003\|gb\|AAP3...	6.0E-84	[1..185]	[1..185]
gi\|50752556 - gi\|50752556\|ref\|XP_422829.1\| PREDICTED: hypothetical protein [Gallus gallus]	3.0E-83	[1..185]	[1..187]
gi\|220673371, gi... - gi\|58801520\|ref\|NP_956347.1\| signal sequence receptor, gamma [Danio rerio], gi\|29126995\|gb\|AAH47859....	4.0E-82	[1..185]	[1..185]

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Predicted Domain #1

Region A:
Residues: [1-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPKGSSKQQ SEEDLLLQDF SRNLSAKSSA LFFGNAFIVS AIPIWLYWRI WHMDLIQSAV  60
   61 LYSVMTLVST YLVAFAYKNV KFVLKHKVAQ KREDAVSKEV TRKLSEADNR KMSRKEKDER 120
  121 ILWKKNEVAD YEATTFSIFY NNTLFLVVVI VASFFILKNF NPTVNYILSI SASSGLIALL 180
  181 STGSK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	135.19382
Match:	PF07074.3
Description:	No description for PF07074.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits