YRC Public Data Repository - Protein Structure Prediction

Protein:	CCDS13817.1_1
Organism:	Chlorocebus aethiops
Length:	385 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCDS13817.1_1.

Description	E-value	Query Range	Subject Range
SNF5_BOVIN - SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Bos...	699.0	[0..1]	[385..1]
gi\|9971149 - gi\|9971149\|dbj\|BAB12427.1\| Integrase interactor 1 [Mus musculus]	698.0	[0..1]	[385..1]
gi\|440240 - gi\|440240\|gb\|AAA81905.1\| Ini1	698.0	[0..1]	[385..1]
gi\|73995711 - gi\|73995711\|ref\|XP_857347.1\| PREDICTED: similar to SWI/SNF related, matrix associated, actin depende...	693.0	[0..1]	[385..1]
gi\|55742436 - ref\|NP_001006819.1\| SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subf... SNF5_XENTR - SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Xen...	679.0	[0..2]	[385..1]
gi\|224072150 - gi\|224072150\|ref\|XP_002200053.1\| PREDICTED: SWI/SNF related, matrix associated, actin dependent regu... gi\|542169994\|ref... - PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B memb... SNF5_CHICK - SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Gal...	678.0	[0..1]	[385..1]
SNF5_XENLA - SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Xen...	678.0	[0..2]	[385..1]

Back

Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMMMALSKTF GQKPVKFQLE DDGEFYMIGS EVGNYLRMFR GSLYKRYPSL WRRLATVEER  60
   61 KKIVASSHGK KTKPNTKDHG YTTLATSVTL LKASEVEEIL DGNDEKYKAV SISTEPPTYL 120
  121 REQKAK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [127-258]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RNSQWVPTLP NSSHHLDAVP CSTTINRNRM GRDKKRTFPL CFDDHDPAVI HENASQPEVL  60
   61 VPIRLDMEID GQKLRDAFTW NMNEKLMTPE MFSEILCDDL DLNPLTFVPA IASAIRQQIE 120
  121 SYPTDSILED QS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [259-385]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DQRVIIKLNI HVGNISLVDQ FEWDMSEKEN SPEKFALKLC SELGLGGEFV TTIAYSIRGQ  60
   61 LSWHQKTYAF SENPLPTVEI AIRNTGDADQ WCPLLETLTD AEMEKKIRDQ DRNTRRMRRL 120
  121 ANTAPAW

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits