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View Structure Prediction Details

Protein: CCDS2301.1_1
Organism: Chlorocebus aethiops
Length: 153 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCDS2301.1_1.

Description E-value Query
Range
Subject
Range
gi|109114982 - gi|109114982|ref|XP_001087628.1| PREDICTED: similar to ORM1-like 3 [Macaca mulatta]
5.0E-74 [1..153] [183..335]
gi|114145802, gi... - gi|45478206|gb|AAS66274.1| LRRGT00183 [Rattus norvegicus], gi|114145802|ref|NP_001041362.1| ORM1-lik...
1.0E-68 [1..153] [28..180]
ORML1_MOUSE - ORM1-like protein 1 OS=Mus musculus GN=Ormdl1 PE=2 SV=1
2.0E-66 [1..153] [1..153]
ORML1_XENLA - ORM1-like protein 1 OS=Xenopus laevis GN=ormdl1 PE=2 SV=1
1.0E-65 [1..153] [1..153]
ORML1_BOVIN - ORM1-like protein 1 OS=Bos taurus GN=ORMDL1 PE=2 SV=1
3.0E-65 [1..153] [1..153]
gi|74004988 - gi|74004988|ref|XP_848266.1| PREDICTED: similar to ORM1-like 1 isoform 1 [Canis familiaris]
3.0E-65 [1..153] [1..153]
ORMDL3 - ORM1-like 3 (S. cerevisiae)
8.0E-65 [1..153] [1..153]

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Predicted Domain #1
Region A:
Residues: [1-153]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVGVAHSEV NPNTRVMNSR GMWLTYALGV GLLHIVLLSI PFFSVPVAWT LTNIIHNLGM  60
   61 YVFLHAVKGT PFETPDQGKA RLLTHWEQLD YGVQFTSSRK FFTISPIILY FLASFYTKYD 120
  121 PTHFILNTAS LLSVLIPKMP QLHGVRIFGI NKY

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 92.60206
Match: PF04061.5
Description: No description for PF04061.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle