YRC Public Data Repository - Protein Structure Prediction

Protein:	CCDS10066.1_1
Organism:	Chlorocebus aethiops
Length:	145 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCDS10066.1_1.

Description	E-value	Query Range	Subject Range
gi\|109730881, gi... - gi\|148682450\|gb\|EDL14397.1\| mCG7896 [Mus musculus], gi\|145587107\|ref\|NP_080022.2\| hypothetical prote...	8.0E-48	[1..145]	[1..152]
gi\|76627550 - gi\|76627550\|ref\|XP_875067.1\| PREDICTED: similar to Protein phosphatase 1 regulatory subunit 14D (Gas...	5.0E-44	[1..145]	[199..342]
PP14D_RAT - Protein phosphatase 1 regulatory subunit 14D OS=Rattus norvegicus GN=Ppp1r14d PE=2 SV=1	1.0E-43	[1..145]	[1..146]
gi\|61370248, gi\|... - gi\|61370248\|gb\|AAX43462.1\| LIM domain kinase 2 [synthetic construct], gi\|61370243\|gb\|AAX43461.1\| LIM...	8.0E-41	[28..145]	[572..685]
gi\|73390140, gi\|... - gi\|73390140\|ref\|NP_001026971.1\| LIM domain kinase 2 isoform 1 [Homo sapiens], gi\|15341774\|gb\|AAH1305...	8.0E-41	[28..145]	[572..685]
gi\|182889986, gi... - gi\|50540450\|ref\|NP_001002692.1\| protein phosphatase 1, regulatory (inhibitor) subunit 14B [Danio rer...	1.0E-38	[7..145]	[2..127]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSSSPASCT SPSPDGENPC KKVHWASGRR RTSSTDSESK SHPDSSKIPR SRRPSRLTVK  60
   61 YDRGQLQRWL EMEQWVDAQV QELFQDQATP SEPEIDLEAL MDLSTEEQKT QLEAILGNCP 120
  121 RPTEAFISEL LSQLKKLRRL SRPQK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.045757
Match:	1j2mA
Description:	Myosin phosphatase inhibitor 17kDa protein, CPI-17
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein phosphatase regulator activity	0.371022860344171	bayes_pls_golite062009
phosphatase regulator activity	0.32039835158028	bayes_pls_golite062009
enzyme regulator activity	0.0387747399781402	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: