YRC Public Data Repository - Protein Structure Prediction

Protein:	CCDS8232.1_1
Organism:	Chlorocebus aethiops
Length:	103 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCDS8232.1_1.

Description	E-value	Query Range	Subject Range
gi\|109107909 - gi\|109107909\|ref\|XP_001115704.1\| PREDICTED: similar to potassium voltage-gated channel, Isk-related ...	3.0E-45	[1..103]	[1..103]
KCNE3_MOUSE - Potassium voltage-gated channel subfamily E member 3 OS=Mus musculus GN=Kcne3 PE=3 SV=1	4.0E-45	[1..103]	[1..103]
gi\|77632646, gi\|... - gi\|77632646\|gb\|ABB00305.1\| cardiac voltage-gated potassium channel accessory subunit isoform 3b [Hom...	4.0E-44	[1..99]	[1..99]
gi\|47522996, gi\|... - gi\|47522996\|ref\|NP_999258.1\| potassium voltage-gated channel, Isk-related family, member 3 [Sus scro...	2.0E-41	[1..103]	[1..99]
gi\|57102546 - gi\|57102546\|ref\|XP_542315.1\| PREDICTED: similar to potassium voltage-gated channel, Isk-related fami...	2.0E-40	[1..103]	[1..99]
gi\|61864955 - gi\|61864955\|ref\|XP_606161.1\| PREDICTED: similar to KCNE3 [Bos taurus]	3.0E-39	[1..103]	[1..99]
KCNE3_RAT - Potassium voltage-gated channel subfamily E member 3 OS=Rattus norvegicus GN=Kcne3 PE=1 SV=1	1.0E-37	[1..103]	[1..107]
gi\|148228535, gi... - gi\|25992756\|gb\|AAN77245.1\| voltage-gated potassium channel subunit MiRP2 [Xenopus laevis], gi\|148228...	1.0E-31	[1..103]	[1..99]
gi\|50731409 - gi\|50731409\|ref\|XP_425664.1\| PREDICTED: similar to KCNE3 [Gallus gallus]	8.0E-25	[1..103]	[36..129]
KCNE1_CAVPO - Potassium voltage-gated channel subfamily E member 1 OS=Cavia porcellus GN=KCNE1 PE=2 SV=1	7.0E-18	[45..98]	[31..84]

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Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METTNGTETW YESLHAVLKA LNATLHSNLL CRPGPGLGPD NQTEERRASL PGRDDNSYMY  60
   61 ILFVMFLFAV TVGSLILGYT RSRKVDKRSD PYHVYIKNRV SMI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits