YRC Public Data Repository - Protein Structure Prediction

Protein:	CCDS7812.1_1
Organism:	Chlorocebus aethiops
Length:	115 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCDS7812.1_1.

Description	E-value	Query Range	Subject Range
gi\|119588900 - gi\|119588900\|gb\|EAW68494.1\| parathyroid hormone, isoform CRA_a [Homo sapiens] gi\|55635601 - gi\|55635601\|ref\|XP_521846.1\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]	189.0	[0..1]	[115..33]
PTHY_FELCA - Parathyroid hormone OS=Felis catus GN=PTH PE=3 SV=1	183.0	[0..1]	[115..1]
PTHY_CANLF - Parathyroid hormone OS=Canis lupus familiaris GN=PTH PE=3 SV=1	183.0	[0..1]	[115..1]
gi\|114636278 - gi\|114636278\|ref\|XP_001171819.1\| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes] gi\|208968649 - gi\|208968649\|dbj\|BAG74163.1\| parathyroid hormone [synthetic construct] PTH - parathyroid hormone	181.0	[0..1]	[115..1]
PTHY_BOVIN - Parathyroid hormone OS=Bos taurus GN=PTH PE=1 SV=1	179.0	[0..1]	[115..1]
gi\|2144646 - pir\|\|PTPG parathyroid hormone precursor - pig PTHY_PIG - Parathyroid hormone OS=Sus scrofa GN=PTH PE=1 SV=1	176.0	[0..1]	[115..1]
PTHY_HORSE - Parathyroid hormone OS=Equus caballus GN=PTH PE=3 SV=1	176.0	[0..1]	[115..1]
gi\|4092930, gi\|6... - gi\|74216176\|dbj\|BAE23743.1\| unnamed protein product [Mus musculus], gi\|68534186\|gb\|AAH99456.1\| Parat...	165.0	[0..1]	[115..1]
PTHY_RAT - Parathyroid hormone OS=Rattus norvegicus GN=Pth PE=2 SV=1	165.0	[0..1]	[115..1]

Back

Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPAKDMAKV MIVMLAICFL TKSDGKSVKK RSVSEIQLMH NLGKHLNSME RVEWLRKKLQ  60
   61 DVHNFIALGA PLAPRDAGSQ RPRKKEDNIL VESHEKSLGE ADKADVDVLT KAKSQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	64.356547
Match:	PF01279.8
Description:	No description for PF01279.8 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.864	N/A	N/A	a.29.16	Description not found.
View	Download	0.758	N/A	N/A	a.52.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View	Download	0.758	N/A	N/A	a.52.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View	Download	0.745	N/A	N/A	a.29.16	Description not found.
View	Download	0.732	N/A	N/A	a.29.3	Acyl-CoA dehydrogenase C-terminal domain-like
View	Download	0.716	N/A	N/A	d.108.1	Acyl-CoA N-acyltransferases (Nat)
View	Download	0.608	N/A	N/A	d.189.1	PX domain
View	Download	0.583	N/A	N/A	a.52.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View	Download	0.558	N/A	N/A	a.4.9	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
View	Download	0.554	N/A	N/A	a.52.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits