| Protein: | gi|42519806, gi|... |
| Organism: | Lactobacillus johnsonii NCC 533 |
| Length: | 647 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42519806, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
484.0 | [0..1] | [646..1] |
|
|
473.0 | [0..1] | [647..1] |
|
|
451.0 | [0..1] | [647..1] |
|
|
430.0 | [0..1] | [646..1] |
|
|
424.0 | [0..1] | [646..1] |
|
|
421.0 | [0..1] | [645..1] |
|
|
420.0 | [0..1] | [644..1] |
|
|
411.0 | [0..1] | [646..1] |
|
Region A: Residues: [1-82] |
1 11 21 31 41 51
| | | | | |
1 MDHKKVAEAV IEAVGRDNLV AAAHCATRLR LVLKDDSKVN MKMLDSDPDI KGTFKTNGQF 60
61 QIIIGPGDVN NVYDELIKMT GL
|
| Detection Method: |  |
| Confidence: | 10.69897 |
| Match: | 2r4qA |
| Description: | No description for 2r4qA was found. |
|
Region A: Residues: [83-270] |
1 11 21 31 41 51
| | | | | |
1 SELSTDDLKK VAQKDQKFNP VMAFIKLLSD IFVPIIPALV AGGLLMALNN FLTSPGLFGA 60
61 KSVVQMAPNV KGLSEIIQVM SAAPFIFMPI LVGMSAAKRF GANQFLGATI GMIMTTPALG 120
121 GAGKYWDIFG LHVSQTNYQY QVIPVLVAVW LLAFLEKRFH KWLPSAVDFT FTPLLSIMIT 180
181 GFLTFTII
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [271-478] |
1 11 21 31 41 51
| | | | | |
1 GPVFKGVSDA ITAAIVWLYN TTGAFGMGIF GLSYSAIVTT GLHQSFPAVE TQLLAEYARG 60
61 RGSGDFIFVT ACMANVAQGA ATFAIYFLTK NEKVKGLASS SGVSALLGIT EPALFGVNLK 120
121 YKFPFFCALI GAGVGAAFAG LMHVTAAALG SAGFLGFLSM VPKSIPMWAL SVVISFIVAF 180
181 GLTFVYGKRH FKEDVVEESG TVESAGDQ
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [479-647] |
1 11 21 31 41 51
| | | | | |
1 VAQQEKAEQI IKEDKELHDE VIAAPVSGKA ESLKDVNDPV FSTEAMGKGA AMVPSEGTIY 60
61 SPVTGEITVA YETKHAYGIK SDEGAEVLIH IGIDTVNMKG EGFTTDVKQG QHVEKGEKLG 120
121 TVDLDAVKKA GYDTTVMTVI TNTTSYANVQ RIDGVEKKHG DDLIAVTKR
|
| Detection Method: | |
| Confidence: | 42.0 |
| Match: | 1ggrA |
| Description: | Glucose-specific factor III (glsIII) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| protein-N(PI)-phosphohistidine-sugar phosphotransferase activity | 3.63095060058431 | bayes_pls_golite062009 |
| carbohydrate transmembrane transporter activity | 2.68179471492286 | bayes_pls_golite062009 |
| binding | 0.587569240975485 | bayes_pls_golite062009 |
| transporter activity | 0.416424316903358 | bayes_pls_golite062009 |
| transmembrane transporter activity | 0.245554686788991 | bayes_pls_golite062009 |
| active transmembrane transporter activity | 0.00716122418063003 | bayes_pls_golite062009 |
