YRC Public Data Repository - Protein Structure Prediction

Protein:	RECX_LACJO
Organism:	Lactobacillus johnsonii NCC 533
Length:	271 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RECX_LACJO.

Description	E-value	Query Range	Subject Range
gi\|23003245 - gi\|23003245\|ref\|ZP_00046912.1\| COG2137: Uncharacterized protein conserved in bacteria [Lactobacillus... RECX_LACGA - Regulatory protein RecX OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243 / JCM 1131 / NCIMB 1... gi\|226820006 - gi\|226820006\|ref\|ZP_03809125.1\| recombination regulator RecX [Lactobacillus gasseri MV-22] gi\|238853815, gi... - gi\|238853815\|ref\|ZP_04644181.1\| regulatory protein RecX [Lactobacillus gasseri 202-4], gi\|238833624\|...	275.0	[0..1]	[271..1]
RECX_LEUMM - Regulatory protein RecX OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 5...	265.0	[0..1]	[267..1]
gi\|28378009, gi\|... - gi\|28378009\|ref\|NP_784901.1\| recombination regulator RecX [Lactobacillus plantarum WCFS1], gi\|282708... RECX_LACPL - Regulatory protein recX OS=Lactobacillus plantarum GN=recX PE=3 SV=1	261.0	[0..2]	[264..5]
RECX_BACSU - Regulatory protein RecX OS=Bacillus subtilis (strain 168) GN=recX PE=3 SV=1 gi\|221322209 - gi\|221322209\|ref\|ZP_03603503.1\| recombination regulator RecX [Bacillus subtilis subsp. subtilis str.... RECX_BACSU - Regulatory protein recX OS=Bacillus subtilis GN=recX PE=3 SV=1 gi\|221313010 - gi\|221313010\|ref\|ZP_03594815.1\| recombination regulator RecX [Bacillus subtilis subsp. subtilis str.... gi\|221317936 - gi\|221317936\|ref\|ZP_03599230.1\| recombination regulator RecX [Bacillus subtilis subsp. subtilis str....	256.0	[0..1]	[262..1]
gi\|81429086, gi\|... - gi\|81429086\|ref\|YP_396086.1\| recombination regulator RecX [Lactobacillus sakei subsp. sakei 23K], gi...	248.0	[0..1]	[266..12]
RECX_LACBA - Regulatory protein RecX OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=recX PE=3 SV=1	248.0	[0..1]	[266..1]
gi\|69248259, gi\|... - gi\|69248259\|ref\|ZP_00604693.1\| Regulatory protein RecX [Enterococcus faecium DO], gi\|68194474\|gb\|EAN...	248.0	[0..1]	[266..12]
RECX_OCEIH - Regulatory protein recX OS=Oceanobacillus iheyensis GN=recX PE=3 SV=1 RECX_OCEIH - Regulatory protein RecX OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE8...	245.0	[0..1]	[264..1]
gi\|116491666, gi... - gi\|48865641\|ref\|ZP_00319500.1\| COG2137: Uncharacterized protein conserved in bacteria [Oenococcus oe...	243.0	[0..2]	[269..3]
RECX_LISIN - Regulatory protein recX OS=Listeria innocua GN=recX PE=3 SV=1 RECX_LISIN - Regulatory protein RecX OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=recX PE=3 SV=1	243.0	[0..2]	[259..1]

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Predicted Domain #1

Region A:
Residues: [1-60]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPIITKISTQ KRKGRYNIFI DNEYAFSVSE RTLAEKRLLK GTELSLEDIE KIKKAEADSH  60
   61

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.720	0.526	regulation of DNA repair	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.620	0.214	regulation of DNA repair	b.36.1	PDZ domain-like
View	Download	0.603	N/A	N/A	b.36.1	PDZ domain-like
View	Download	0.587	N/A	N/A	b.36.1	PDZ domain-like
View	Download	0.584	N/A	N/A	d.175.1	Penicillin binding protein dimerisation domain

Predicted Domain #2

Region A:
Residues: [61-271]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALQLAMSYLS YQPRSVYEVL TYLNKQGISP EASQSAIENL IELNYLDDNN FARLFIQNNL  60
   61 RVGKDGPRSI SSKLKQKGVA NDIIQDSLYE VDDEEWIEAG MRLIHSIGHQ VGKMSYKEIK 120
  121 QKALKKLQTH GFNQELGELV VDQLDLESTE DDQLEALKKQ GIKAWRRYRR DDDFKRRQKV 180
  181 KRYLFQHGFS SGEIDSFLSG EVVNLEEIDE Y

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	11.21467
Match:	PF02631.7
Description:	No description for PF02631.7 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits