YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|41583437, gi\|...
Organism:	Lactobacillus johnsonii NCC 533
Length:	204 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|41583437, gi|....

Description	E-value	Query Range	Subject Range
gi\|42737104, gi\|... - gi\|42781182\|ref\|NP_978429.1\| mutT/nudix family protein [Bacillus cereus ATCC 10987], gi\|42737104\|gb\|...	193.0	[0..1]	[204..1]
gi\|47566814, gi\|... - gi\|47566814\|ref\|ZP_00237532.1\| MutT/nudix family protein [Bacillus cereus G9241], gi\|47556443\|gb\|EAL...	192.0	[0..1]	[204..1]
gi\|49481573, gi\|... - gi\|49481573\|ref\|YP_036194.1\| MutT/NUDIX family hydrolase [Bacillus thuringiensis serovar konkukian s...	191.0	[0..1]	[204..1]
gi\|228593282, gi... - gi\|229190165\|ref\|ZP_04317168.1\| MutT/nudix [Bacillus cereus ATCC 10876], gi\|228593282\|gb\|EEK51098.1\|... gi\|229144676, gi... - gi\|229144676\|ref\|ZP_04273077.1\| MutT/nudix [Bacillus cereus BDRD-ST24], gi\|228638808\|gb\|EEK95237.1\| ... gi\|30020169, gi\|... - gi\|30020169\|ref\|NP_831800.1\| phosphohydrolase (MutT/nudix family protein) [Bacillus cereus ATCC 1457... gi\|229127468, gi... - gi\|229127468\|ref\|ZP_04256461.1\| MutT/nudix [Bacillus cereus BDRD-Cer4], gi\|228656009\|gb\|EEL11854.1\| ... gi\|228807230, gi... - gi\|228952444\|ref\|ZP_04114526.1\| MutT/nudix [Bacillus thuringiensis serovar kurstaki str. T03a001], g... gi\|206972166, gi... - gi\|206972166\|ref\|ZP_03233114.1\| mutT/nudix family protein [Bacillus cereus AH1134], gi\|206733089\|gb\|...	190.0	[0..1]	[204..1]
gi\|167632741, gi... - gi\|167632741\|ref\|ZP_02391067.1\| mutT/nudix family protein [Bacillus anthracis str. A0442], gi\|167531... gi\|167513776, gi... - gi\|167638475\|ref\|ZP_02396752.1\| mutT/nudix family protein [Bacillus anthracis str. A0193], gi\|167513... gi\|170686366, gi... - gi\|170686366\|ref\|ZP_02877587.1\| mutT/nudix family protein [Bacillus anthracis str. A0465], gi\|170669... gi\|170706078, gi... - gi\|170706078\|ref\|ZP_02896540.1\| mutT/nudix family protein [Bacillus anthracis str. A0389], gi\|170129... gi\|177650892, gi... - gi\|177650892\|ref\|ZP_02933789.1\| mutT/nudix family protein [Bacillus anthracis str. A0174], gi\|172083... gi\|190567868, gi... - gi\|190567868\|ref\|ZP_03020779.1\| mutT/nudix family protein [Bacillus anthracis Tsiankovskii-I], gi\|19... gi\|49178839, gi\|... - gi\|49184912\|ref\|YP_028164.1\| mutT/nudix family protein [Bacillus anthracis str. Sterne], gi\|49178839... gi\|47527337, gi\|... - gi\|47527337\|ref\|YP_018686.1\| mutT/nudix family protein [Bacillus anthracis str. 'Ames Ancestor'], gi... gi\|30262072, gi\|... - gi\|30262072\|ref\|NP_844449.1\| mutT/nudix family protein [Bacillus anthracis str. Ames], gi\|30256698\|g... gi\|65319356, gi\|... - gi\|65319356\|ref\|ZP_00392315.1\| COG1051: ADP-ribose pyrophosphatase [Bacillus anthracis str. A2012], ... gi\|165870231, gi... - gi\|165870231\|ref\|ZP_02214887.1\| mutT/nudix family protein [Bacillus anthracis str. A0488], gi\|164714... gi\|254758270 - gi\|254758270\|ref\|ZP_05210297.1\| mutT/nudix family protein [Bacillus anthracis str. Australia 94] gi\|254751398 - gi\|254751398\|ref\|ZP_05203435.1\| mutT/nudix family protein [Bacillus anthracis str. Vollum] gi\|254739442 - gi\|254739442\|ref\|ZP_05197141.1\| mutT/nudix family protein [Bacillus anthracis str. Kruger B] gi\|254737082 - gi\|254737082\|ref\|ZP_05194786.1\| mutT/nudix family protein [Bacillus anthracis str. Western North Ame... gi\|254684638 - gi\|254684638\|ref\|ZP_05148498.1\| mutT/nudix family protein [Bacillus anthracis str. CNEVA-9066] gi\|229267373, gi... - gi\|229602965\|ref\|YP_002866435.1\| MutT/NUDIX family protein [Bacillus anthracis str. A0248], gi\|22926... gi\|227005303, gi... - gi\|227815132\|ref\|YP_002815141.1\| mutT/nudix family protein [Bacillus anthracis str. CDC 684], gi\|227...	189.0	[0..1]	[204..1]
gi\|52143382, gi\|... - gi\|52143382\|ref\|YP_083447.1\| MutT/NUDIX family hydrolase [Bacillus cereus E33L], gi\|51976851\|gb\|AAU1...	189.0	[0..1]	[204..1]
gi\|218897038, gi... - gi\|218897038\|ref\|YP_002445449.1\| mutT/nudix family protein [Bacillus cereus G9842], gi\|218540757\|gb\|... gi\|228859001, gi... - gi\|228900656\|ref\|ZP_04064876.1\| MutT/nudix [Bacillus thuringiensis IBL 4222], gi\|228859001\|gb\|EEN034... gi\|228965054, gi... - gi\|228965054\|ref\|ZP_04126151.1\| MutT/nudix [Bacillus thuringiensis serovar sotto str. T04001], gi\|22... gi\|74490847, gi\|... - gi\|75761662\|ref\|ZP_00741609.1\| Phosphohydrolase (MutT/nudix family protein) [Bacillus thuringiensis ...	189.0	[0..1]	[204..1]
gi\|62515780, gi\|... - gi\|62515780\|ref\|ZP_00387165.1\| COG1051: ADP-ribose pyrophosphatase [Lactobacillus delbrueckii subsp....	188.0	[0..3]	[204..6]
gi\|104773579, gi... - gi\|104773579\|ref\|YP_618559.1\| MutT/NUDIX family hydrolase [Lactobacillus delbrueckii subsp. bulgaric...	188.0	[0..3]	[204..5]
gi\|253753970, gi... - gi\|253753970\|ref\|YP_003027111.1\| MutT/NUDIX hydrolase family protein [Streptococcus suis P1/7], gi\|2... gi\|253752145, gi... - gi\|253752145\|ref\|YP_003025286.1\| MutT/NUDIX hydrolase family protein [Streptococcus suis SC84], gi\|2... gi\|251818369, gi... - gi\|253755905\|ref\|YP_003029045.1\| MutT/NUDIX hydrolase family protein [Streptococcus suis BM407], gi\|... gi\|50590015, gi\|... - gi\|81177354\|ref\|ZP_00876188.1\| NUDIX hydrolase [Streptococcus suis 89/1591], gi\|80975977\|gb\|EAP39652... gi\|145692101, gi... - gi\|146321295\|ref\|YP_001201006.1\| ADP-ribose pyrophosphatase [Streptococcus suis 98HAH33], gi\|1456921... gi\|146319091, gi... - gi\|146319091\|ref\|YP_001198803.1\| ADP-ribose pyrophosphatase [Streptococcus suis 05ZYH33], gi\|1456898...	187.0	[0..2]	[204..3]

Back

Predicted Domain #1

Region A:
Residues: [1-204]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDKLVDWAM RLQSLAQAGL TYGKDSFDLE RYQEIRDISA EMMVEKSDLP IEKVKNLFCN  60
   61 EVGYQTPKIG TRAAIFKDNK MLLVQESDGL WSIPGGWCEI NLSVKENVIK EIKEEAGIDI 120
  121 TVEKLIAIHD SNKHYKGMYP YGISTVFFLC KPAGGGFKEN DETIASGYFA LEDLPELSED 180
  181 KGSREQVEMC FKAYRDSHWQ AEFE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.0
Match:	1vk6A
Description:	Crystal structure of NADH pyrophosphatase (1790429) from Escherichia coli k12 at 2.20 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits