YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|41583041, gi\|...
Organism:	Lactobacillus johnsonii NCC 533
Length:	393 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|41583041, gi|....

Description	E-value	Query Range	Subject Range
gi\|68264132, gi\|... - gi\|68536533\|ref\|YP_251238.1\| hypothetical protein jk1447 [Corynebacterium jeikeium K411], gi\|6826413...	244.0	[0..32]	[391..174]
gi\|116095557, gi... - gi\|23003675\|ref\|ZP_00047329.1\| hypothetical protein Lgas_03001714 [Lactobacillus gasseri ATCC 33323]... gi\|226819982 - gi\|226819982\|ref\|ZP_03809101.1\| permease [Lactobacillus gasseri MV-22] gi\|238833805, gi... - gi\|238853587\|ref\|ZP_04643957.1\| transport protein [Lactobacillus gasseri 202-4], gi\|238833805\|gb\|EEQ... gi\|23003675 - gi\|23003675\|ref\|ZP_00047329.1\| COG0628: Predicted permease [Lactobacillus gasseri]	241.0	[0..1]	[393..1]
gi\|116513697, gi... - gi\|62515588\|ref\|ZP_00386989.1\| COG0628: Predicted permease [Lactobacillus delbrueckii subsp. bulgari... gi\|104773700, gi... - gi\|104773700\|ref\|YP_618680.1\| hypothetical protein Ldb0590 [Lactobacillus delbrueckii subsp. bulgari...	229.0	[0..5]	[380..1]
gi\|68195854, gi\|... - gi\|69245324\|ref\|ZP_00603368.1\| Protein of unknown function UPF0118 [Enterococcus faecium DO], gi\|681... gi\|48825717 - ref\|ZP_00286957.1\| COG0628: Predicted permease [Enterococcus faecium]	227.0	[0..3]	[388..4]
gi\|254557021, gi... - gi\|254557021\|ref\|YP_003063438.1\| transport protein [Lactobacillus plantarum JDM1], gi\|254045948\|gb\|A... gi\|28378815, gi\|... - gi\|28378815\|ref\|NP_785707.1\| transport protein [Lactobacillus plantarum WCFS1], gi\|28271652\|emb\|CAD6...	225.0	[0..8]	[390..1]
gi\|238830163, gi... - gi\|238857235\|ref\|ZP_04647485.1\| putative membrane protein [Enterococcus faecalis TUSoD Ef11], gi\|238... gi\|29344553, gi\|... - gi\|29377087\|ref\|NP_816241.1\| hypothetical protein EF2602 [Enterococcus faecalis V583], gi\|29344553\|g...	224.0	[0..2]	[389..3]
gi\|21282975, gi\|... - gi\|21282975\|ref\|NP_646063.1\| hypothetical protein MW1246 [Staphylococcus aureus subsp. aureus MW2], ... gi\|87126779, gi\|... - gi\|87160805\|ref\|YP_493951.1\| hypothetical protein SAUSA300_1254 [Staphylococcus aureus subsp. aureus... gi\|49483552, gi\|... - gi\|49483552\|ref\|YP_040776.1\| hypothetical protein SAR1371 [Staphylococcus aureus subsp. aureus MRSA2... gi\|82656482, gi\|... - gi\|82750951\|ref\|YP_416692.1\| hypothetical protein SAB1215 [Staphylococcus aureus RF122], gi\|82656482... gi\|25507593 - pir\|\|G89911 conserved hypothetical protein SA1192 [imported] - Staphylococcus aureus (strain N315) gi\|221140615 - gi\|221140615\|ref\|ZP_03565108.1\| hypothetical protein SauraJ_03131 [Staphylococcus aureus subsp. aure... gi\|90582410, gi\|... - gi\|90582410\|ref\|ZP_01238174.1\| Protein of unknown function UPF0118 [Staphylococcus aureus subsp. aur... gi\|221137645 - gi\|221137645\|ref\|ZP_03562449.1\| hypothetical protein SauraJK_03183 [Staphylococcus aureus subsp. aur... gi\|148267847, gi... - gi\|90586247\|ref\|ZP_01241947.1\| Protein of unknown function UPF0118 [Staphylococcus aureus subsp. aur... gi\|13701156, gi\|... - gi\|15926939\|ref\|NP_374472.1\| hypothetical protein SA1192 [Staphylococcus aureus subsp. aureus N315],... gi\|49486202, gi\|... - gi\|49486202\|ref\|YP_043423.1\| hypothetical protein SAS1299 [Staphylococcus aureus subsp. aureus MSSA4... gi\|57284549, gi\|... - gi\|57650363\|ref\|YP_186247.1\| hypothetical protein SACOL1395 [Staphylococcus aureus subsp. aureus COL... gi\|15924349, gi\|... - gi\|15924349\|ref\|NP_371883.1\| hypothetical protein SAV1359 [Staphylococcus aureus subsp. aureus Mu50]... gi\|87202643, gi\|... - gi\|88195085\|ref\|YP_499885.1\| hypothetical protein SAOUHSC_01358 [Staphylococcus aureus subsp. aureus... gi\|227558390, gi... - gi\|227558390\|ref\|ZP_03988437.1\| permease [Staphylococcus aureus subsp. aureus MN8], gi\|227245181\|gb\|... gi\|227851449, gi... - gi\|227900197\|ref\|ZP_04018002.1\| permease [Staphylococcus aureus subsp. aureus TCH60], gi\|227851449\|g... gi\|251814281, gi... - gi\|251814281\|ref\|ZP_04828754.1\| permease [Staphylococcus aureus subsp. aureus TCH70], gi\|251802276\|g... gi\|160368334, gi... - gi\|161509525\|ref\|YP_001575184.1\| hypothetical protein USA300HOU_1293 [Staphylococcus aureus subsp. a... gi\|253317046 - gi\|253317046\|ref\|ZP_04840259.1\| hypothetical protein SauraC_13104 [Staphylococcus aureus subsp. aure... gi\|253728661, gi... - gi\|253733393\|ref\|ZP_04867558.1\| permease [Staphylococcus aureus subsp. aureus TCH130], gi\|253728661\|... gi\|255006147 - gi\|255006147\|ref\|ZP_05144748.2\| hypothetical protein SauraM_06750 [Staphylococcus aureus subsp. aure... gi\|156979678, gi... - gi\|156979678\|ref\|YP_001441937.1\| hypothetical protein SAHV_1347 [Staphylococcus aureus subsp. aureus... gi\|87126779\|gb\|A... - hypothetical protein SAUSA300_1254 [Staphylococcus aureus subsp. aureus USA300], putative membrane p... gi\|151221483, gi... - gi\|151221483\|ref\|YP_001332305.1\| hypothetical protein NWMN_1271 [Staphylococcus aureus subsp. aureus...	224.0	[0..1]	[393..8]
gi\|242242638, gi... - gi\|242242638\|ref\|ZP_04797083.1\| permease [Staphylococcus epidermidis W23144], gi\|242233774\|gb\|EES360... gi\|57866873, gi\|... - gi\|57866873\|ref\|YP_188508.1\| hypothetical protein SERP0929 [Staphylococcus epidermidis RP62A], gi\|57...	224.0	[0..2]	[393..11]
gi\|227868425, gi... - gi\|227903538\|ref\|ZP_04021343.1\| permease [Lactobacillus acidophilus ATCC 4796], gi\|227868425\|gb\|EEJ7... gi\|58336979, gi\|... - gi\|58336979\|ref\|YP_193564.1\| putative permease [Lactobacillus acidophilus NCFM], gi\|58254296\|gb\|AAV4...	223.0	[0..1]	[382..1]
gi\|76563128, gi\|... - gi\|76788071\|ref\|YP_329894.1\| hypothetical protein SAK_1281 [Streptococcus agalactiae A909], gi\|76563...	221.0	[0..4]	[392..5]

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Predicted Domain #1

Region A:
Residues: [1-155]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVKKHHQKS NFFVKWFLNN RFSIALLNIL LFFLIILVFN QISFVLNPFW TFFNAIFPPI  60
   61 LVASIQYYLM DPVVDWMEKK LKVPRIITII LLFVIVVGGL IWIINTLIPI IQHQTDSLVK 120
  121 NWPTYWKDAQ KGFEKIIRDP RLNGVRGGIN QAISD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [156-218]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AQTKMFKTGQ DSFNLALSNL SSAVNVITMI FMTLLTAPFV LFFMLKDGHR LNSYVTKFAP  60
   61 KKL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [219-393]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QPSFSSLLSD INGAVASYIR GQITVAFWVG VMFAIGYSVI GLNYGITLAV LAGILNMIPY  60
   61 FGTFIAFIPA IILGLISSPM MLIKVLIVFA IEQTLEGRVI SPLVMGNKMN MNPVTTILLL 120
  121 IGASAVAGLW GVIFAIPVYA VIKIIVTRLF NYYRKISNLY DDESIEDSDT QGSKE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits