YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE37606
Organism: Caenorhabditis elegans
Length: 563 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE37606.

Description E-value Query
Range
Subject
Range
gi|157769811 - gi|157769811|ref|XP_001676726.1| Hypothetical protein CBG14680 [Caenorhabditis briggsae AF16]
gi|187028061, gi... - gi|39598056|emb|CAE68748.1| Hypothetical protein CBG14680 [Caenorhabditis briggsae], gi|187028061|em...
547.0 [0..1] [563..1]

Back

Predicted Domain #1
Region A:
Residues: [1-98]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRSCICQV SAGIIFLIGA ALLVAGLVIV LNVFPNIVNN QINDSKVLGL NADGTLNSFT  60
   61 DSWVNSKYIS TMQYWVYDYT NTIGIMNRAI YPDVREKG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [99-149]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PYAFDEILTM DKLNFSENGE FMEFRQIQTF VFNPNKSCAG CDPYKDKVLI P

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [150-353]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DMGFQVGIDQ IDTVIEGILK NPLAATICHA IMKGKPNANQ TCSNLGALIE GELGTLISLF  60
   61 NVSPFTTVTV DQLLFSGYKT PFVEKFLDEA LGMLHFLFGT APKPLDDPPI QLNPLNGTSD 120
  121 IINTVLTGKT DPLKAGYMTE FRSISNNSLF NSIGNTLPPM WWPYANKTYC KDPNSALVLT 180
  181 GTNGDYFKNF VKKTDILPAF VSDV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [354-434]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CRTIHFVFDR EVTVKGFKGY RFVMPPTQFD YSLDENCGYC IPLKYGSYEY PAQSACLPSG  60
   61 LLDISQCTGG PIIMSKPHFY Q

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [435-563]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASKVVSKFVP RFKPTYDNDE TMLDIEPNTG TVLQAQKRLQ INMLVNQFKH IRSYSVMRPG  60
   61 AYPLAWVNES FYMDQNTIDQ LNSQLFTPVS TVNTICWIAV GLGAGLIALS IVMVIVSFCC 120
  121 FRDEHHKTS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle