YRC Public Data Repository - Protein Structure Prediction

Protein:	SCAR2_ARATH
Organism:	Arabidopsis thaliana
Length:	1399 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SCAR2_ARATH.

Description	E-value	Query Range	Subject Range
gi\|3395428, gi\|7... - pir\|\|T02501 hypothetical protein At2g38440 [imported] - Arabidopsis thaliana, gi\|3395428\|gb\|AAC28760...	344.0	[0..1]	[1382..1]
gi\|88188037, gi\|... - gi\|88602575\|ref\|YP_502753.1\| mucin 2, intestinal/tracheal [Methanospirillum hungatei JF-1], gi\|88188...	254.0	[0..133]	[1391..884]
gi\|37930527, gi\|... - gi\|37930527\|gb\|AAP74661.1\| elicitor-like transglutaminase M81 [Phytophthora infestans], gi\|23505399\|...	236.0	[0..82]	[1234..447]
Muc12Ea-PA - The gene Mucin 12Ea is referred to in FlyBase by the symbol Dmel\Muc12Ea (CG32602, FBgn0052602). It ...	222.0	[0..91]	[1369..640]
SLAP1_CLOTH - Cell surface glycoprotein 1 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 ...	217.0	[0..653]	[1373..1367]
gi\|50745920 - gi\|50745920\|ref\|XP_420299.1\| PREDICTED: similar to Wiskott-Aldrich syndrome protein family member 3 ...	212.0	[0..1]	[251..1]
SLP1_CLOTM, SLAP... - (Q06852) Cell surface glycoprotein 1 precursor (Outer layer protein B) (S-layer protein 1), Cell sur...	204.0	[0..697]	[1373..762]

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Predicted Domain #1

Region A:
Residues: [1-297]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLTRYQSRN EYGLADPDLY QAADKDDPEA LLEGVAMAGL VGILRQLGDL AEFAAEMFHD  60
   61 LHEEVMATAS RSHGLMARVQ QLEAEFPSIE KALLCQTDHS PFFSNKGVEW HPNLQLEQSV 120
  121 VTSGDLPRCV MDSYEECRGP PRLFLLDKFD ISGAGACLKR YTDPSFVRLE TSSYEESWDD 180
  181 IQREKKSQKA KRRASQWRNG GTPENALSSH AKLHELFLEE HLEAHHSDPA RVVKLKTRKL 240
  241 DGCSLISKSG ESYMEKFVQT RVDSKISYEI ITQNPGLLTW NMDSARDVVT DIPEISM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [298-443]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VGAMDKSHGG SRAEVSFPSE QENVANVNMN GGFIEKDIET VPESTYNEVR GTTITQDSQT  60
   61 VLNGKPGFFQ QRSYSEDLTS EADNYVDAPA TMESETETDD ECRPKSRSDT LKDGNHHIYS 120
  121 DAVEERMEDP PQFSFSHSNG NTPVSE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [444-510]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGRSSFGKKS TSYSYSDTAS ISIDDQSDGE KLSGCLPSTS SFKSELVDSM SHVTPEANKV  60
   61 SHDLNVQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [511-565]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESVSSSNVDG QTSLSSNGTC SSPRPVSQND QSCSLTVQSL ASEVVETSPE LVRLD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [566-784]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LMKGGNDGRK VDPFDSSKSC ASFDAKNSDL PSETSSISST SEGSRCDSTI EKNCMVASNL  60
   61 VNSGTSPQAF VDSQTGKQLP IADTDFETNS IVACSEVLAN SGSDPEERDG RCLTGKLVPC 120
  121 SAGVGMEVSP DTPSKVCGPS SADGIHLKDT LDDETDCVSV TNVVVDVDSK NSVADVGSQS 180
  181 SVADIDSQSS VAEISDEHSC AFGNTADVSV SESHEDTLE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #6

Region A:
Residues: [785-910]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGMSVPSDFN SGVEKLAGDA SPTCSKCDDH ISHEGFHDLS GLDNATTDIV PNVELDVSDN  60
   61 DNDTSSGGVN HAVSLSSTRG KGSLPWISTN TYQSSSDAGE IFHDTVVESD GTLLEDNNPE 120
  121 SEIKMH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #7

Region A:
Residues: [911-1058]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSPLEVSSEG LSTEPDNKDV ESIESTSPKP SLDQRNRDTE TKSPGESILD DNCIDSTQVY  60
   61 NLNLLESEAI DQAVREQTSY ASHEVADEEL LQSNVFRGLE FEPQSAGLEF APQSAGIELN 120
  121 RPKQELNLDP TFPSFGFIPE TIPPNPED

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #8

Region A:
Residues: [1059-1321]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPLPPMQWL IGKVPHSFPT FMGESVETSS SALSAAPPIG SSLNVQIGSP PSELSVSLGS  60
   61 DESERLPGGF VHNASEKPLQ SSIQFPTMST DLNSQYDSSE LPTIPYQECI EDFGSEENNL 120
  121 LADHAAQNHE LVYSQASSLQ LPQVKHEDFK DDADVHESQS SSDDHHCPET KSLTPTQSTK 180
  181 VEDKGHSVPD ASNAETAESS NTSVQKINPV SVGDAMWPVS CFSVAPTLDT YKTEVVPTVR 240
  241 LPRPRSPLVD AVAAHDRRKM KKV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #9

Region A:
Residues: [1322-1399]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SEMVHPPIKS KQDDKDSLLA QIRNKSVNLK PAVTTRPSIQ TGPRTDLRVA AILEKANTIR  60
   61 MAMAGSDEDE DSDSWSDS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits