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View Structure Prediction Details

Protein: gi|215765938, gi...
Organism: Oryza sativa Japonica Group
Length: 150 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|215765938, gi....

Description E-value Query
Range
Subject
Range
gi|88900388, gi|... - gi|88900388|gb|ABD57506.1| At4g19400 [Arabidopsis thaliana], gi|18415306|ref|NP_567584.1| actin bind...
244.0 [0..4] [122..2]

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Predicted Domain #1
Region A:
Residues: [1-150]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAADWMWARR SWEKWAGKHV GASGKPVKAA LLLNYDPTGP SRLLPVVAEQ EGTELKAVDL  60
   61 LPFLDFVRRN NLQMEFFSIG SNRYLVTSIH EHWFCARCVN AVQPEGEGVI VMEIGAYLLV 120
  121 CMMVLLVLLH KQWWLLISLH GTLIEELTNC 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.39
Match: 1k0kA
Description: Profilin (actin-binding protein)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.447239705742047 bayes_pls_golite062009
protein binding 0.148405107932314 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle