YRC Public Data Repository - Protein Structure Prediction

Protein:	PUX5_ARATH
Organism:	Arabidopsis thaliana
Length:	421 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUX5_ARATH.

Description	E-value	Query Range	Subject Range
gi\|7268288, gi\|7... - pir\|\|F71418 hypothetical protein - Arabidopsis thaliana, gi\|7268288\|emb\|CAB78583.1\| phosphatase like...	277.0	[0..1]	[412..1]
gi\|114680493 - gi\|114680493\|ref\|XP_001154020.1\| PREDICTED: p47 protein isoform 5 [Pan troglodytes]	247.0	[0..66]	[421..2]
gi\|74205899, gi\|... - gi\|74205899\|dbj\|BAE23234.1\| unnamed protein product [Mus musculus], gi\|38198665\|ref\|NP_938085.1\| p47...	243.0	[0..66]	[421..2]
gi\|109092580 - gi\|109092580\|ref\|XP_001113312.1\| PREDICTED: similar to p47 protein isoform a isoform 7 [Macaca mulat...	242.0	[0..66]	[421..2]
gi\|33150522 - gi\|33150522\|gb\|AAP97139.1\|AF086909_1 p47 [Homo sapiens]	241.0	[0..66]	[421..2]
gi\|27735468, gi\|... - gi\|27735468\|gb\|AAH41297.1\| Nsfl1c protein [Xenopus laevis], gi\|148235839\|ref\|NP_001080187.1\| p47 [Xe...	240.0	[0..66]	[421..2]
NSF1C_RAT - NSFL1 cofactor p47 OS=Rattus norvegicus GN=Nsfl1c PE=1 SV=1	240.0	[0..66]	[421..2]

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Predicted Domain #1

Region A:
Residues: [1-76]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATETNENLI NSFIEITSSS REEANFFLES HTWNLDAAVS TFLDNDAAAA AEPNPTGPPP  60
   61 PSSTIAGAQS PSQSHS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.522879
Match:	2dzlA
Description:	No description for 2dzlA was found.

Predicted Domain #2

Region A:
Residues: [77-163]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDYTPSETSP SPSRSRSASP SSRAAPYGLR SRGGAGENKE TENPSGIRSS RSRQHAGNIR  60
   61 TFADLNRSPA DGEGSDSDEA NEYYTGG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [164-318]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QKSGMMVQDP KKVKDVDELF DQARQSAVDR PVEPSRSAST SFTGAARLLS GEAVSSSPQQ  60
   61 QQQEQPQRIM HTITFWLNGF TVNDGPLRGF SDPENAAFMN SISRSECPSE LEPADKKIPV 120
  121 HVDLVRRGEN FTEPPKPKNP FQGVGRTLGA SGSGS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.0
Match:	1ss6A
Description:	Solution structure of SEP domain from human p47
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [319-421]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSAPQASSAP MNVAPAPSRG LVVDPAAPTT SIQLRLADGT RLVSRFNNHH TVRDVRGFID  60
   61 ASRPGGSKEY QLLTMGFPPK QLTELDQTIE QAGIANAVVI QKF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.69897
Match:	1s3sG
Description:	Crystal structure of AAA ATPase p97/VCP ND1 in complex with p47 C
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits