YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|53850515, gi\|...
Organism:	Arabidopsis thaliana
Length:	423 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|53850515, gi|....

Description	E-value	Query Range	Subject Range
gi\|102139993 - gi\|102139993\|gb\|ABF70128.1\| glycosyl transferase family 14 protein [Musa balbisiana]	382.0	[0..25]	[422..1]
gi\|9454535, gi\|1... - gi\|9454535\|gb\|AAF87858.1\|AC022520_2 Hypothetical protein [Arabidopsis thaliana], pir\|\|F96571 hypothe...	381.0	[0..21]	[423..2]
gi\|55276719 - gi\|55276719\|gb\|AAV49991.1\| putative N-acetylglucosaminyltransferase [Hordeum vulgare subsp. vulgare]	378.0	[0..17]	[422..8]
gi\|61656789, gi\|... - gi\|61656789\|emb\|CAH10050.1\| BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein [Triticum aestivum], gi...	364.0	[0..17]	[422..8]
gi\|212007815 - gi\|212007815\|gb\|ACJ22501.1\| beta-1-3-galactosyl-o-glycosyl-glycoprotein [Triticum aestivum] gi\|109450910, gi... - gi\|61656799\|emb\|CAH10066.1\| BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein [Triticum turgidum], gi...	364.0	[0..17]	[422..8]
gi\|46358506 - gi\|46358506\|gb\|AAS88559.1\| glycosylation enzyme-like protein [Triticum monococcum] gi\|61656784, gi\|... - gi\|61656784\|emb\|CAH10044.1\| BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein [Triticum aestivum], gi...	363.0	[0..17]	[422..8]

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Predicted Domain #1

Region A:
Residues: [1-423]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLSQDHKIL FNGVRKYVIM EKKYVFSFVI TSLVCVVLLA TSFNIGLMSS LRPPINGTLS  60
   61 SFPKNDSNVV GKQPREDDKL PRFAYLVSGS KGDLESLWRT LRALYHPRNQ YIVHLDLESP 120
  121 VDERSELASR ISNDPMYSKA GNVYMITKAN LVTYTGPTMV ANTLHACAIL LKRTPDWDWF 180
  181 INLSASDYPL VTQDDLIHTF STLDRNLNFI EHTSSLGWKY KKRAMPLIID PGLYMLNKSN 240
  241 VLLVRPNRSL PSAFKLFTAW MALSHAFVEY IIYGWDNLPR TLLMYYTNFV SSPEGYFHTV 300
  301 ICNVPEFSKT AVNHDLHYIA WDKPPRQHPR MLSQRDMGKM ISSGSAFGRK FRRNDTVLDK 360
  361 IDKELLIRIN EDGFTPGGWC GGKPECSVVE DVARIRPSSG AVRLKELVDR LVTEAKLGKN 420
  421 QCV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	76.522879
Match:	2gakA
Description:	No description for 2gakA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits