YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|48374968, gi\|...
Organism:	Sorghum bicolor
Length:	168 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|48374968, gi|....

Description	E-value	Query Range	Subject Range
gi\|92894223 - gi\|92894223\|gb\|ABE92133.1\| Glutathione peroxidase [Medicago truncatula]	186.0	[0..1]	[167..103]
gi\|21360380 - gi\|21360380\|gb\|AAM47493.1\| glutathione peroxidase 1 [Oryza sativa] gi\|115459848, gi... - gi\|222629338\|gb\|EEE61470.1\| hypothetical protein OsJ_15735 [Oryza sativa Japonica Group], gi\|2156930...	181.0	[0..1]	[168..1]
GPX6_ARATH - Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial OS=Arabidopsis thaliana ...	180.0	[0..1]	[165..64]
gi\|2982362 - gi\|2982362\|gb\|AAC78466.1\| glutathione peroxidase [Zantedeschia aethiopica]	180.0	[0..2]	[167..79]
gi\|44663004 - gi\|44663004\|gb\|AAS47590.1\| phospholipid-hydroperoxide glutathione peroxidase [Setaria italica]	178.0	[0..1]	[168..1]
gi\|194703274, gi... - gi\|48374955\|gb\|AAT42154.1\| putative glutathione peroxidase [Zea mays], gi\|226501294\|ref\|NP_001141210...	178.0	[0..1]	[168..1]
RPA3627 - RPA3627 putative glutathione peroxidase 4089161:4089637 reverse MW:17177	177.0	[0..7]	[165..1]
gi\|37930463 - gi\|37930463\|gb\|AAP69867.1\| glutathione peroxidase 1 [Lotus japonicus]	176.0	[0..1]	[167..73]

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Predicted Domain #1

Region A:
Residues: [1-168]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAASSATSV HDFTVKDASG KDVDLSTYKG KVLLIVNVAS QCGLTNSNYT ELAQLYEKYK  60
   61 DQGFEILAFP CNQFGGQEPG TNEEIVQFAC TRFKAEYPIF DKVDVNGNNA APIYKFLKSS 120
  121 KGGLFGDSIK WNFSKFLVDK EGRVVDRYAP TTSPLSIEKD IKKLLGSS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.69897
Match:	2p5qA
Description:	No description for 2p5qA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits