| Protein: | CSC1_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 771 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CSC1_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
915.0 | [0..1] | [771..1] |
|
Region A: Residues: [1-172] |
1 11 21 31 41 51
| | | | | |
1 MATLQDIGVS AGINILSAFV FFIIFAVLRL QPFNDRVYFS KWYLKGLRSS PARGGAFAQR 60
61 FVNLDFRSYM KFLNWMPEAL KMPEPELIDH AGLDSVVYLR IYWLGLKIFT PIAVLAWAVL 120
121 VPVNWTNNTL EMAKQLRNVT SSDIDKLSVS NIPEYSMRFW THIVMAYAFT IW
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [173-364] |
1 11 21 31 41 51
| | | | | |
1 TCYVLMKEYE TIANMRLQFV ASEARRPDQF TVLVRNVPPD ADESVSELVE HFFLVNHPDH 60
61 YLTHQVVCNA NKLADLVKKK KKLQNWLDYY QLKYARNNSQ RIMVKLGFLG LWGQKVDAIE 120
121 HYIAEIDKIS KEISKEREEV VNDPKAIMPA AFVSFKTRWA AAVCAQTQQT RNPTQWLTEW 180
181 APEPRDVFWS NL
|
| Detection Method: | |
| Confidence: | 1.2 |
| Match: | 1zh5A |
| Description: | Structural basis for recognition of UUUOH 3'-terminii of nascent RNA pol III transcripts by La autoantigen |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.787118623292657 | bayes_pls_golite062009 |
| nucleic acid binding | 0.0269483316710413 | bayes_pls_golite062009 |
|
Region A: Residues: [365-594] |
1 11 21 31 41 51
| | | | | |
1 AIPYVSLTVR RLIMHVAFFF LTFFFIVPIA FVQSLATIEG IVKAAPFLKF IVDDKFMKSV 60
61 IQGFLPGIAL KLFLAFLPSI LMIMSKFEGF TSISSLERRA AFRYYIFNLV NVFLASVIAG 120
121 AAFEQLNSFL NQSANQIPKT IGVAIPMKAT FFITYIMVDG WAGVAGEILM LKPLIMFHLK 180
181 NAFLVKTDKD REEAMDPGSI GFNTGEPRIQ LYFLLGLVYA PVTPMLLPFI
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [595-682] |
1 11 21 31 41 51
| | | | | |
1 LVFFALAYIV YRHQIINVYN QEYESAAAFW PDVHGRVIAA LVISQLLLMG LLGTKHAALA 60
61 APFLIALPVL TIGFHHFCKG RYEPAFIR
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [683-771] |
1 11 21 31 41 51
| | | | | |
1 YPLQEAMMKD TLETAREPNL NLKGYLQNAY VHPVFKGDED DYDIDDKLGK FEDEAIIVPT 60
61 KRQSRRNTPA PSIISGDDSP SLPFSGKLV
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
