YRC Public Data Repository - Protein Structure Prediction

Protein:	PT311_ARATH
Organism:	Arabidopsis thaliana
Length:	308 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PT311_ARATH.

Description	E-value	Query Range	Subject Range
gi\|60468186 - gi\|60468186\|gb\|EAL66196.1\| hypothetical protein DDB0204910 [Dictyostelium discoideum] gi\|66812030, gi\|... - gi\|66812030\|ref\|XP_640194.1\| hypothetical protein [Dictyostelium discoideum AX4], gi\|60468186\|gb\|EAL...	152.0	[0..6]	[304..212]
gi\|109123815 - gi\|109123815\|ref\|XP_001113968.1\| PREDICTED: similar to solute carrier family 35, member E1 [Macaca m...	152.0	[0..2]	[305..312]
gi\|111619247, gi... - gi\|111619247\|ref\|ZP_01406261.1\| Protein of unknown function DUF6, transmembrane [Acidovorax avenae s...	151.0	[0..35]	[304..428]
gi\|66551782 - gi\|66551782\|ref\|XP_396066.2\| PREDICTED: similar to solute carrier family 35, member E2, partial [Api...	151.0	[0..3]	[308..385]
gi\|169776641 - gi\|169776641\|ref\|XP_001822787.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83771522 - gi\|83771522\|dbj\|BAE61654.1\| unnamed protein product [Aspergillus oryzae]	150.0	[0..2]	[302..123]
gi\|42544808, gi\|... - gi\|46108454\|ref\|XP_381285.1\| hypothetical protein FG01109.1 [Gibberella zeae PH-1], gi\|42544808\|gb\|E...	150.0	[0..18]	[304..283]
gi\|49093248, gi\|... - gi\|67526981\|ref\|XP_661552.1\| hypothetical protein AN3948.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	147.0	[0..9]	[304..124]
gi\|68555476, gi\|... - gi\|94309735\|ref\|YP_582945.1\| hypothetical protein Rmet_0790 [Ralstonia metallidurans CH34], gi\|93353...	147.0	[0..15]	[304..244]
gi\|85111291 - gi\|85111291\|ref\|XP_963867.1\| hypothetical protein [Neurospora crassa OR74A] gi\|32420179, gi\|... - gi\|32420179\|ref\|XP_330533.1\| hypothetical protein [Neurospora crassa], gi\|28925610\|gb\|EAA34631.1\| hy...	143.0	[0..6]	[304..265]

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Predicted Domain #1

Region A:
Residues: [1-153]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIAANGRFF TIGLVASWYS SNIGVLLLNK YLLSNYGFKY PIFLTMCHMT ACSLLSYVAI  60
   61 AWMKMVPMQT IRSRVQFLKI AALSLVFCVS VVFGNISLRF LPVSFNQAIG ATTPFFTAVF 120
  121 AYLITFKREA WLTYFTLVPV VTGVVIASGS EPS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [154-308]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FHLFGFIMCI AATAARALKS VLQGILLSSE GEKLNSMNLL LYMAPIAVVF LLPATLIMEK  60
   61 NVVGITIALA RDDFRIVWYL LFNSALAYFV NLTNFLVTKH TSALTLQVLG NAKGAVAVVV 120
  121 SILIFRNPVS VTGMLGYSLT VCGVILYSEA KKRSK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	50.200659
Match:	PF03151.8
Description:	No description for PF03151.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits