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View Structure Prediction Details

Protein: PDI16_ARATH
Organism: Arabidopsis thaliana
Length: 534 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PDI16_ARATH.

Description E-value Query
Range
Subject
Range
gi|114670980 - gi|114670980|ref|XP_001164327.1| PREDICTED: prolyl 4-hydroxylase, beta subunit isoform 5 [Pan troglo...
371.0 [0..68] [521..17]

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Predicted Domain #1
Region A:
Residues: [1-72]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTKPKPNSK FSILFTFLLL LSFLIFVARS SDVAVEAGSE EELDDLEQLL AVDEQLQEER  60
   61 PEQQSEAETV SK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.69897
Match: 2hlsA
Description: No description for 2hlsA was found.

Predicted Domain #2
Region A:
Residues: [73-534]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AQRIVVELNG DNTKRLIDGN EYVMVLGYAP WCARSAELMP RFAEAATDLK EIGSSVLMAK  60
   61 IDGERYSKVA SQLEIKGFPT LLLFVNGTSQ SYTGGFSSEE IVIWVQKKTG ASTIKLDTVD 120
  121 EASGFLKKHH TFILGLFEKS EDSSGHDEFV KAASLDNEIQ FVETSSIDVA KLLFPNLKTN 180
  181 NVFVGLVKTE AEKYTSYDGP CQAEKIVEFL NSNKFPLVTK LTESNTVRVY SSPVKLQVMV 240
  241 FSKTDDFESL AQPLEDIARK FKSKLMLIYI DISNENLAMP FLTLFGIEDA KKTVVAAFDN 300
  301 NLNSKYLLES DPSPSNIEEF CFGLAHGTVS AYYKSQPIPD NQNASVVAVV GRTFDEVVLR 360
  361 SSENVLLEVH TPWCINCEAL SKQVEKLSQH FKGFENLVFA RIDASANEHP KLTVDDYPTI 420
  421 LLYKTGEKEN PLKLSTKSSA KDMAVLINKE LKWKDQSGKD EL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 71.0
Match: 2b5eA
Description: Crystal Structure of Yeast Protein Disulfide Isomerase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle