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View Structure Prediction Details

Protein: ELF6_ARATH
Organism: Arabidopsis thaliana
Length: 1340 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for ELF6_ARATH.

Predicted Domain #1
Region A:
Residues: [1-110]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNVEIPNWL KALPLAPVFR PTDTEFADPI AYISKIEKEA SAFGICKIIP PLPKPSKKYV  60
   61 FYNLNKSLLK CPELVSDVDI SKVCKEDRAV FTTRQQELGQ TVKKNKGEKG 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.39794
Match: 2e6rA
Description: No description for 2e6rA was found.

Predicted Domain #2
Region A:
Residues: [111-513]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSNSQRSGVK QVWQSGGVYT LDQFEAKSKA FYKTQLGTVK ELAPVVIEAL FWKAALEKPI  60
   61 YIEYANDVPG SAFGEPEDHF RHFRQRKRRG RGFYQRKTEN NDPSGKNGEK SSPEVEKAPL 120
  121 ASTSLSSQDS SKQKNMDIVD EMEGTAGWKL SNSSWNLQMI ARSPGSVTRF MPDDIPGVTS 180
  181 PMVYIGMLFS WFAWHVEDHE LHSMNYLHTG SPKTWYAVPC DYALDFEEVI RKNSYGRNID 240
  241 QLAALTQLGE KTTLVSPEMI VASGIPCCRL VQNPGEFVVT FPRSYHVGFS HGFNCGEAAN 300
  301 FGTPQWLNVA KEAAVRRAAM NYLPMLSHQQ LLYLLTMSFV SRVPRSLLPG GRSSRLRDRQ 360
  361 REEREFLVKR AFVEDILNEN KNLSVLLREP GSRLVMWDPD LLP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 107.0
Match: 2oq6A
Description: No description for 2oq6A was found.

Predicted Domain #3
Region A:
Residues: [514-707]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RHSALALAAA GVAGASAVSP PAVAKKELEE GHSELQNKEK TSLLEELSLF MEKLNDVYYD  60
   61 DDDGLLNDFQ VDTGTLPCVA CGVLGFPFMS VVQPSEKALK DLSERQGETD AQEIMTLSSE 120
  121 KSDCEWKTSS RYIRPRIFCL EHTIELQRLL QSRGGLKFLV ICHKDFQKFK AHAAIVAEEV 180
  181 KVPFSYDDVL LESA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [708-785]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SQEELSLIDL AIEDEEKYEH SVDWTSELGI NLRYCVKVRK NSPTKKIQHA LSLGGLFSDT  60
   61 SQMLDFTTIR WLQRKSRS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [786-929]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KAKPSSTSSF TPCEHLEVKA DGKLRDNLDS QTGKKEEKII QYSRKKKLNP KPSAEQVQEL  60
   61 ATLAKSKDFD KTCKNFSSRS HLDSAIRSEM NSEIGDSGRV IGVSFSINPC SSSFTVGHGQ 120
  121 EHPEITVKFG SDLDGNVTNS LSMV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.30103
Match: 1meyC
Description: Designed zinc finger protein
Matching Structure (courtesy of the PDB):

Predicted Domain #6
Region A:
Residues: [930-1079]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGDSADLTLT SISREQHQGH SMTSNNNGSN SGSHVVASQT ILVSTGDNHD GPRKLSGDYV  60
   61 CSDVSVRGIQ EAVEMSDQEF GEPRSTVTNI EDEQQSQIVK PTQREAVFGD HEQVEGAEAV 120
  121 STRENLCSEI ILHTEHSSAH VGMEIPDINT 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.09691
Match: 2dlqA
Description: No description for 2dlqA was found.

Predicted Domain #7
Region A:
Residues: [1080-1160]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASENLVVDMT HDGEPLESSD ILSSSNGDEA SSNGLQVLND ELSMESEVSS SENTEVIEAP  60
   61 NSMGEAKKKR KIESESETND N

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #8
Region A:
Residues: [1161-1340]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PESSIGFIRS PCEGLRSRGK RKATCETSLK HTETSDEEKK PIAKRLKKTP KACSGSRQQE  60
   61 VPTTTHPNRC YLEGCKMTFE SKAKLQTHKR NRCTHEGCGK KFRAHKYLVL HQRVHKDERP 120
  121 FECSWKGCSM TFKWQWARTE HLRLHTGERP YICKVDGCGL SFRFVSDYSR HRRKTMHYVT 180
  181 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 63.154902
Match: 2i13A
Description: No description for 2i13A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle