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View Structure Prediction Details

Protein: cutl-28
Organism: Caenorhabditis elegans
Length: 696 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cutl-28.

Description E-value Query
Range
Subject
Range
gi|39582646, gi|... - gi|39582646|emb|CAE73750.1| Hypothetical protein CBG21281 [Caenorhabditis briggsae], gi|187022706|em...
343.0 [0..7] [684..1]

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Predicted Domain #1
Region A:
Residues: [1-349]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYPFLLILI LSTLPSTVSP CEITFILETL KSVNSTASLI IRKSVDSLSQ CTRFCSSVPN  60
   61 CTHFTFSNAE PIEKKNGGFN CHLHSKSPVL TTSGSRTVGT KTCLENKCLK RSFAFEKFPG 120
  121 RSLVNSSFII KTFSISMEEC LSQCQKESSC RAALHNNDTS LCQLSRVSLN SVYNPRLYFK 180
  181 ASYSVDLYEN NCVDYAMTSS ACTFMRVNGG GLKSVSDQLI QNVGSFDECE QMCVIRSRIS 240
  241 DVCRSYTYDN STNECNLMWA SARMLGRSPL ESMKPNLFHG DLDDCVNFSL KCREDNLEVK 300
  301 ASSMRMFIGK MMTKKSKKIM CQEDYEGNYD FSSKFDFKKC GLDPNKSKD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 39.0
Match: 2f83A
Description: No description for 2f83A was found.

Predicted Domain #2
Region A:
Residues: [350-522]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STYRGMVHVK EGSTSLVTIR DKVLQVNCRL HKSMPSEEQF LSVQMNVREN NKTNQVMSDV  60
   61 VVVTAPPAQT NPKFSLKILG LDSTEADTVH IGDYGWIMLA VKNSAEDFTV TNLVAKDVQT 120
  121 GRVLRIIDED GCVLRRDIVK EIRKTDNYVK LKISFSGFRR QTEVVYHAMM ETC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [523-696]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TVGCMPKCNQ DMMLPEEETN VHSLPLSLDL PRHRMVRRSL AGEPRELQLT SDVYKVTGHK  60
   61 LTLLNPPSPK QFDFPAPKSD FEFNDNGEFH EGDVIVVKHS PNLWTSVKHC LIDDVTCMLT 120
  121 VVLGAIQMFL MFSCFLIMYC YYQQWRFYRE LNRPQEHNVQ YYTTSKPEEN TRDT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle