YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|60547717, gi\|...
Organism:	Arabidopsis thaliana
Length:	396 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|60547717, gi|....

Description	E-value	Query Range	Subject Range
gi\|125606472, gi... - gi\|52076055\|dbj\|BAD46568.1\| minichromosome maintenance protein 10 isoform 1 -like [Oryza sativa Japo...	435.0	[0..16]	[396..22]
gi\|25371315, gi\|... - gi\|4803945\|gb\|AAD29818.1\| hypothetical protein [Arabidopsis thaliana], pir\|\|F84595 hypothetical prot...	307.0	[0..1]	[310..1]
gi\|42553793, gi\|... - gi\|46136009\|ref\|XP_389696.1\| hypothetical protein FG09520.1 [Gibberella zeae PH-1], gi\|42553793\|gb\|E...	296.0	[0..12]	[334..261]
gi\|109088223 - gi\|109088223\|ref\|XP_001085751.1\| PREDICTED: similar to minichromosome maintenance protein 10 isoform...	293.0	[0..17]	[270..187]
MCM10_XENTR - Protein MCM10 homolog OS=Xenopus tropicalis GN=mcm10 PE=2 SV=1	291.0	[0..24]	[367..159]
gi\|109505206, gi... - gi\|109506166\|ref\|XP_001071383.1\| PREDICTED: similar to minichromosome maintenance protein 10 [Rattus...	289.0	[0..16]	[275..235]
gi\|50770552 - gi\|50770552\|ref\|XP_427082.1\| PREDICTED: similar to minichromosome maintenance protein 10 isoform 2; ...	288.0	[0..26]	[276..228]
MCM10_XENLA - Protein MCM10 homolog OS=Xenopus laevis GN=mcm10 PE=1 SV=2	287.0	[0..25]	[322..173]
MCM10_DANRE - Protein MCM10 homolog OS=Danio rerio GN=mcm10 PE=3 SV=1	285.0	[0..11]	[277..122]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENDQEDLEL LLSLDDRVLE TPPGSPSAAP GYLTDDESPK RRGHSDLSDF RSVVQDCIDY  60
   61 NPKPIAKNTK PKGSNNSNTN DIEKFSGLRI RNQLLSPAEI SDLFSDIRFV RLPTIKNLLM 120
  121 GDKLSGCWAT MGVITEKGQP KTSSI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [146-269]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GQAYGIWKIG SLNENNVSLF LFGDAYKKNE TEKAGTVFGL FNCSLRKDNG GREFSLSVNS  60
   61 AKQMVKLGVS ADYGVCTAKR KDGTTCTSVV NKRQGAFCKI HKLNASDKFA TMRTELKGGN 120
  121 LRTA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [270-396]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FRDLKSQGIY TVEPPADRSG NKKTTQPVRV LSVEGLRKAL SGADKVTPNV HSQGIRFLNE  60
   61 MARQKASKNV NKKSEAVNKS TEKRKASTKE TQVNGEPKRK KTEHRKETPE ISTGKMMLLD 120
  121 FCSSDEE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits