YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30794100, gi\|...
Organism:	Arabidopsis thaliana
Length:	518 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30794100, gi|....

Description	E-value	Query Range	Subject Range
gi\|51536590 - gi\|51536590\|gb\|AAU05533.1\| At4g04320 [Arabidopsis thaliana]	752.0	[0..1]	[518..1]
gi\|25504467 - pir\|\|A95272 hypothetical protein SMa0151 [imported] - Sinorhizobium meliloti (strain 1021) magaplasm... gi\|16262534, gi\|... - gi\|16262534\|ref\|NP_435327.1\| hypothetical protein SMa0151 [Sinorhizobium meliloti 1021], gi\|14523143...	569.0	[0..5]	[518..373]
gi\|58534495, gi\|... - gi\|58698990\|ref\|ZP_00373842.1\| malonyl-CoA decarboxylase, putative [Wolbachia endosymbiont of Drosop... gi\|225630116, gi... - gi\|225630116\|ref\|YP_002726907.1\| Malonyl-CoA decarboxylase [Wolbachia sp. wRi], gi\|225592097\|gb\|ACN9...	569.0	[0..44]	[518..44]
DCMC_MOUSE - Malonyl-CoA decarboxylase, mitochondrial OS=Mus musculus GN=Mlycd PE=1 SV=1	557.0	[0..82]	[517..68]
gi\|6912498, gi\|4... - gi\|6912498\|ref\|NP_036345.1\| malonyl-CoA decarboxylase [Homo sapiens], gi\|4960188\|gb\|AAD34631.1\|AF153...	554.0	[0..82]	[517..30]
gi\|42410085, gi\|... - gi\|42520347\|ref\|NP_966262.1\| malonyl-CoA decarboxylase, putative [Wolbachia endosymbiont of Drosophi...	554.0	[0..44]	[518..44]
DCMC_RAT - Malonyl-CoA decarboxylase, mitochondrial OS=Rattus norvegicus GN=Mlycd PE=1 SV=1	553.0	[0..82]	[517..68]

Back

Predicted Domain #1

Region A:
Residues: [1-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKKNLAILL RARMRSNNPS KFSLSQFPKE IQSNPQENHS RDHIVQNSND FGTTGRVYDV  60
   61 VRETMHSAIS ASKTGVLDIT LNDFQEGYFS LSLEDREKLL LVLAKEYDVN REQVRELVKQ 120
  121 YLGLETPASD DDKGALSSVF YRIERNLRHA LRPTYEVLFE RLNTHPGGLR FLSILRADLL 180
  181 SILSKEN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [188-295]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TPSLRTLDSF LKEKLGMWLS PATLELHQIT WDDPASLLEK IVAYEAVHPI SNLLDLKRRL  60
   61 GIGRRCFGYF HPSVPGEPLI FIEVALMETV AQTIQEVLWD NPPIPENQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [296-518]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ATCALFYSIS STQPGLAGIN LGKFLIKRVI TLVKKDMPHV STFATLSPIP GFMQWLLSKL  60
   61 SSQSRFAEDE RGTQSNSPSS TFSEKVLLPE EEHALMTLSD ESSSGSNGME VLLNLLSVKN 120
  121 CDWATSPRLL PVLEPILMRL CARYLLQEKK RGKALDSVAN FHLQNGAMVE RINWMADRSE 180
  181 KGIRQSGGIM VNYVYRLENI EDYAQSYFGS GKIHASPGIH SRL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits