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View Structure Prediction Details

Protein: AI5L4_ARATH
Organism: Arabidopsis thaliana
Length: 392 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AI5L4_ARATH.

Description E-value Query
Range
Subject
Range
AI5L6_ARATH - ABSCISIC ACID-INSENSITIVE 5-like protein 6 OS=Arabidopsis thaliana GN=ABF3 PE=1 SV=1
228.0 [0..1] [392..1]

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Predicted Domain #1
Region A:
Residues: [1-172]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTHIDINNL GGDTSRGNES KPLARQSSLY SLTFDELQST LGEPGKDFGS MNMDELLKNI  60
   61 WTAEDTQAFM TTTSSVAAPG PSGFVPGGNG LQRQGSLTLP RTLSQKTVDE VWKYLNSKEG 120
  121 SNGNTGTDAL ERQQTLGEMT LEDFLLRAGV VKEDNTQQNE NSSSGFYANN GA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [173-302]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGLEFGFGQP NQNSISFNGN NSSMIMNQAP GLGLKVGGTM QQQQQPHQQQ LQQPHQRLPP  60
   61 TIFPKQANVT FAAPVNMVNR GLFETSADGP ANSNMGGAGG TVTATSPGTS SAENNTWSSP 120
  121 VPYVFGRGRR 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [303-392]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNTGLEKVVE RRQKRMIKNR ESAARSRARK QAYTLELEAE IESLKLVNQD LQKKQAEIMK  60
   61 THNSELKEFS KQPPLLAKRQ CLRRTLTGPW 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 13.0
Match: 1gtwA
Description: CRYSTAL STRUCTURE OF C/EBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE TOM-1A PROMOTER
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle