YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|110737176, gi...
Organism:	Arabidopsis thaliana
Length:	642 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110737176, gi....

Description	E-value	Query Range	Subject Range
gi\|7436526, gi\|3... - pir\|\|T02535 phosphoribosylaminoimidazole carboxylase (EC 4.1.1.21) - Arabidopsis thaliana, gi\|323625...	476.0	[0..1]	[642..1]
gi\|17933427 - gi\|17933427\|gb\|AAL48287.1\|AF452495_1 aminoimidazole ribonucleotide carboxylase [Vigna unguiculata]	439.0	[0..8]	[641..4]
gi\|37983592 - gi\|37983592\|gb\|AAR06291.1\| phosphoribosylaminoimidazole carboxylase [Nicotiana tabacum]	430.0	[0..49]	[641..32]
gi\|70734326, gi\|... - gi\|70734326\|ref\|YP_257966.1\| carbamoyl phosphate synthase large subunit [Pseudomonas fluorescens Pf-...	425.0	[0..1]	[622..469]
CARB_PSESM - Carbamoyl-phosphate synthase large chain OS=Pseudomonas syringae pv. tomato GN=carB PE=3 SV=1 CARB_PSESM - Carbamoyl-phosphate synthase large chain OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=carB ... gi\|213928508, gi... - gi\|213966658\|ref\|ZP_03394809.1\| carbamoyl-phosphate synthase, large subunit [Pseudomonas syringae pv...	422.0	[0..1]	[622..469]
gi\|71554480, gi\|... - gi\|71733927\|ref\|YP_276322.1\| carbamoyl phosphate synthase large subunit [Pseudomonas syringae pv. ph...	422.0	[0..1]	[622..469]
gi\|23470946, gi\|... - gi\|66047418\|ref\|YP_237259.1\| carbamoyl phosphate synthase large subunit [Pseudomonas syringae pv. sy... tr\|F3G3S2\|F3G3S2... - Carbamoyl-phosphate synthase large chain OS=Pseudomonas syringae pv. pisi str. 1704B GN=carB PE=3 SV...	421.0	[0..1]	[622..469]
gi\|115435108, gi... - gi\|66274576\|dbj\|BAD98622.1\| putative phosphoribosylaminoimidazole carboxylase, chloroplast precursor...	420.0	[0..103]	[641..84]
gi\|91798290, gi\|... - gi\|92115200\|ref\|YP_575128.1\| carbamoyl-phosphate synthase large subunit [Chromohalobacter salexigens...	419.0	[0..1]	[618..469]

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Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLLKQSSAA VLVVGNTTPV LHTSRSTYRV GPFPVTRTQS FQSLTMANLQ KLPTSSSGKL  60
   61 NTASAVPCSS HDASP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [76-382]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ISENRENKHV HGVSEKIVGV LGGGQLGRML CQAASQLAIK VMILDPSKNC SASALSYGHM  60
   61 VDSFDDSATV EEFAKRCGVL TVEIEHVDVD TLEKLEKQGV DCQPKASTIR IIQDKYMQKV 120
  121 HFSQHGIPLP EFMEISDIEG ARKAGELFGY PLMIKSKRLA YDGRGNAVAN NQDELSSAVT 180
  181 ALGGFSRGLY IEKWAPFVKE LAVIVARGRD GSMVCYPVVE TIHRDNICHI VKAPADVPWK 240
  241 INKLATDVAQ KAVGSLEGAG VFAVELFLTE DSQILLNEVA PRPHNSGHQT IECCYTSQFE 300
  301 QHLRAVV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.69897
Match:	1iowA
Description:	COMPLEX OF Y216F D-ALA:D-ALA LIGASE WITH ADP AND A PHOSPHORYL PHOSPHINATE
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [383-472]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLPLGDPSMR TPASIMYNIL GEDDGEAGFK LAHRLIARAL CIPGASVHWY DKPEMRKQRK  60
   61 MGHITLVGQS MGILEQRLQC ILSEQSHQVH

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.6
Match:	1b6rA
Description:	N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), C-domain; N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain; N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [473-642]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETPRVAIIMG SDTDLPVMKD AAKILDLFGV THEVKIVSAH RTPEMMYTYA TSAHSRGVQV  60
   61 IIAGAGGAAH LPGMVASLTP LPVIGVPVRA TRLDGVDSLL SIVQMPRGVP VATVAINNAT 120
  121 NAALLAVRML GISDTDLVSR MRQYQEDMRD ENLNKGEKLE TEGWESYLNQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.39794
Match:	1o4vA
Description:	N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits