YRC Public Data Repository - Protein Structure Prediction

Protein:	COQ2_ARATH
Organism:	Arabidopsis thaliana
Length:	407 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COQ2_ARATH.

Description	E-value	Query Range	Subject Range
gi\|7269214, gi\|7... - pir\|\|T05598 hypothetical protein F9D16.130 - Arabidopsis thaliana, gi\|7269214\|emb\|CAB79321.1\| polypr...	246.0	[0..1]	[353..1]
COQ2_DROPS - 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=... gi\|125775189, gi... - gi\|54638587\|gb\|EAL27989.1\| GA21912 [Drosophila pseudoobscura pseudoobscura], gi\|125775189\|ref\|XP_001...	239.0	[0..76]	[407..39]
3825.m02509, 128... - /numExons=12 /strand=- /begin=98461 /end=104446 /seqFile=euttg.scaffolds.fasta /startCodon=0 /coords... gi\|89295687, gi\|... - gi\|89295687\|gb\|EAR93675.1\| 4-hydroxybenzoate polyprenyl transferase family protein [Tetrahymena ther...	237.0	[0..114]	[406..966]
COQ2_BOVIN - 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Bos taurus GN=COQ2 PE=2 SV=1	234.0	[0..97]	[405..44]
gi\|114593901 - gi\|114593901\|ref\|XP_526592.2\| PREDICTED: para-hydroxybenzoate-polyprenyltransferase, mitochondrial i...	233.0	[0..77]	[406..73]
Coq2-PA - The gene Coenzyme Q biosynthesis protein 2 is referred to in FlyBase by the symbol Dmel\Coq2 (CG9613... gi\|220949886 - gi\|220949886\|gb\|ACL87486.1\| Coq2-PA [synthetic construct]	232.0	[0..101]	[407..54]
gi\|74001788 - gi\|74001788\|ref\|XP_535634.2\| PREDICTED: similar to para-hydroxybenzoate-polyprenyltransferase, mitoc...	231.0	[0..80]	[407..24]
gi\|50746583 - gi\|50746583\|ref\|XP_420564.1\| PREDICTED: similar to hypothetical protein CL640 [Gallus gallus]	231.0	[0..99]	[407..52]
COQ2_AEDAE - 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Aedes aegypti GN=coq2 PE=3 SV=1	230.0	[0..125]	[407..117]
gi\|52138578, gi\|... - gi\|52138578\|ref\|NP_056512.3\| para-hydroxybenzoate-polyprenyltransferase, mitochondrial [Homo sapiens...	230.0	[0..77]	[406..73]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFFGLSRVS RRLLKSSVSV TPSSSSALLQ SQHKSLSNPV TTHYTNPFTK CYPSWNDNYQ  60
   61 VWSKGRELHQ EKFFGVGWNY RLICGMSSSS SVLEGKPKKD DKEKSDGVVV KEASWIDLYL 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [121-285]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEEVRGYAKL ARLDKPIGTW LLAWPCMWSI ALAADPGSLP SFKYMALFGC GALLLRGAGC  60
   61 TINDLLDQDI DTKVDRTKLR PIASGLLTPF QGIGFLGLQL LLGLGILLQL NNYSRVLGAS 120
  121 SLLLVFSYPL MKRFTFWPQA FLGLTINWGA LLGWTAVKGS IAPSI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [286-407]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VLPLYLSGVC WTLVYDTIYA HQDKEDDVKV GVKSTALRFG DNTKLWLTGF GTASIGFLAL  60
   61 SGFSADLGWQ YYASLAAASG QLGWQIGTAD LSSGADCSRK FVSNKWFGAI IFSGVVLGRS 120
  121 FQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits