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View Structure Prediction Details

Protein: gi|30696058, gi|...
Organism: Arabidopsis thaliana
Length: 384 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30696058, gi|....

Description E-value Query
Range
Subject
Range
TPPA_ARATH - Trehalose-phosphate phosphatase A OS=Arabidopsis thaliana GN=TPPA PE=1 SV=1
273.0 [0..1] [384..1]

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Predicted Domain #1
Region A:
Residues: [1-103]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDMKSGHSSP VMTDSPPISN SRLTIRQNRL PYSSAAATAI SQNNNLLLTV PRKKTGILDD  60
   61 VKSNGWLDAM KSSSPPPTIL NKDNLSNDAT DMTYREWMLK YPS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.0
Match: 1gz5A
Description: Trehalose-6-phosphate synthase, OtsA
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [104-384]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALTSFEKIMS FAKGKRIALF LDYDGTLSPI VEEPDCAYMS SAMRSAVQNV AKYFPTAIIS  60
   61 GRSRDKVYEF VNLSELYYAG SHGMDIMSPA GESLNHEHSR TVSVYEQGKD VNLFQPASEF 120
  121 LPMIDKVLCS LIESTKDIKG VKVEDNKFCI SVHYRNVEEK NWTLVAQCVD DVIRTYPKLR 180
  181 LTHGRKVLEI RPVIDWDKGK AVTFLLESLG LNNCEDVLPI YVGDDRTDED AFKVLRDGPN 240
  241 HGYGILVSAV PKDSNAFYSL RDPSEVMEFL KSLVTWKRSM G

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.045757
Match: 1nrwA
Description: Hypothetical protein YwpJ
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.92340854382984 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle