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View Structure Prediction Details

Protein: TIC62_ARATH
Organism: Arabidopsis thaliana
Length: 641 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TIC62_ARATH.

Description E-value Query
Range
Subject
Range
gi|9294698 - gi|9294698|dbj|BAB03098.1| unnamed protein product [Arabidopsis thaliana]
248.0 [0..1] [641..1]

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Predicted Domain #1
Region A:
Residues: [1-386]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGTCFLRGQ PLTTIPSLPS RKGFLLQRWK TNRIVRFSGF KNHSVSGKSR SFDLSLRASG  60
   61 PIRASSVVTE ASPTNLNSKE EDLVFVAGAT GKVGSRTVRE LLKLGFRVRA GVRSAQRAGS 120
  121 LVQSVKEMKL QNTDEGTQPV EKLEIVECDL EKKDSIQPAL GNASVIICCI GASEKEISDI 180
  181 TGPYRIDYLA TKNLVDAATS AKVNNFILVT SLGTNKFGFP AAILNLFWGV LCWKRKAEEA 240
  241 LIESGLNYAI VRPGGMERPT DAYKETHNLT LALDDTLFGG QVSNLQVAEL LACMAKNPQL 300
  301 SFSKIVEVVA ETTAPLTPIE KLLEKIPSKR PYVPPPKASV ATKEVKPVPT KPVTQEPTAP 360
  361 KEDEAPPKEK NVKPRPLSPY ASYEDL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.30103
Match: 2b69A
Description: Crystal Structure of Human UDP-glucoronic acid decarboxylase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.26736023026862 bayes_pls_golite062009
oxidoreductase activity 0.68812524232244 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [387-641]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KPPTSPIPNS TTSVSPAKSK EVDATQVPVE ANVVPVPDST SNVPVVEVKQ VEEKKERPLS  60
   61 PYARYENLKP PSSPSPTASS TRKSDSLSPG PTDSDTDKSS TVAKTVTETA VATSVTETSV 120
  121 ATSVPETAVA TSVTETAAPA TSKMRPLSPY AIYADLKPPT SPTPASTGPK EAASVEDNSE 180
  181 LPGGNNDVLK TVDGNLNTIP PSTPEAVPVV SSAIDTSLAS GDNTAQPKPR PLSPYTMYAD 240
  241 MKPPTSPLPS PVTNH

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.19
Match: 2j63A
Description: No description for 2j63A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle