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View Structure Prediction Details

Protein: CPY71_ARATH
Organism: Arabidopsis thaliana
Length: 631 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CPY71_ARATH.

Description E-value Query
Range
Subject
Range
gi|186464325, gi... - gi|23128981|ref|ZP_00110817.1| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi|18668187...
470.0 [0..2] [455..1270]

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Predicted Domain #1
Region A:
Residues: [1-61]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEESKNGGT TIPTEELAVV AVPPVVEEEE PMVGPGPAPR GKRKRPLQFE QAYLDSLPSA  60
   61 N

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.30103
Match: 2ojhA
Description: No description for 2ojhA was found.

Predicted Domain #2
Region A:
Residues: [62-215]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYEKSYMHRD VVTHVAVSAA EFFISGSMDG HLKFWKKKGV GIEFAKHFRS HLGPIEGLAV  60
   61 SIDGLLCCTI SNDHAVKIYD VVNYDMMAMI RLPYIPGAVE WVYKQGDVKA KLAVSDRDSL 120
  121 FVHIYDPRSG SNEPIASKEI HMNPIKVMKY NPVS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 71.39794
Match: 1vyhC
Description: PAF-AH Holoenzyme: Lis1/Alfa2
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [216-533]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DTMISGDTKG IIEYWSATTL QFPEDEVNFK LKSDTNLFEI IKCKTTISAI EVSPDGKQFS  60
   61 ITAPDRRIRV FWFRTGKLRR VYDESLVVAQ DLQRSDAPLY RLEAIDFGRR MAVEKELEKT 120
  121 ESAPQPNAVF DESSNFLIYA TFLGIKVINL HTNTVARILG KVESNERYLR VALYQGDQGG 180
  181 KKVRKIPAAA ANVNESKEPL TDPTILCCAF KKHRIYMFSR REPEEPEDAS QGRDVFNEKP 240
  241 AADELMSVSD IGNSATTSLP ENVIMHTTLG DIHMKLYPEE CPKTVENFTT HCRNGYYDNH 300
  301 LFHRVIRGFM IQTGDPLG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.30103
Match: 1z68A
Description: Crystal Structure Of Human Fibroblast Activation Protein alpha
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [534-631]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGTGGQSIWG REFEDEFHKS LRHDRPFTLS MANAGPNTNG SQFFITTVAT PWLDNKHTVF  60
   61 GRVVKGMDVV QGIEKVKTDK NDRPYQDVKI LNVTVPKS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 51.39794
Match: 2a2nA
Description: Crystal Structure of the peptidylprolyl isomerase domain of Human PPWD1
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle