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View Structure Prediction Details

Protein: LCAT3_ARATH
Organism: Arabidopsis thaliana
Length: 447 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LCAT3_ARATH.

Description E-value Query
Range
Subject
Range
gi|33318329 - gi|33318329|gb|AAQ05032.1|AF468223_1 phospholipase A1 [Nicotiana tabacum]
329.0 [0..6] [445..7]

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Predicted Domain #1
Region A:
Residues: [1-447]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGWIPCPCWG TNDDENAGEV ADRDPVLLVS GIGGSILHSK KKNSKSEIRV WVRIFLANLA  60
   61 FKQSLWSLYN PKTGYTEPLD DNIEVLVPDD DHGLYAIDIL DPSWFVKLCH LTEVYHFHDM 120
  121 IEMLVGCGYK KGTTLFGYGY DFRQSNRIDL LILGLKKKLE TAYKRSGGRK VTIISHSMGG 180
  181 LMVSCFMYLH PEAFSKYVNK WITIATPFQG APGCINDSIL TGVQFVEGLE SFFFVSRWTM 240
  241 HQLLVECPSI YEMMANPDFK WKKQPEIRVW RKKSENDVDT SVELESFGLI ESIDLFNDAL 300
  301 KNNELSYGGN KIALPFNFAI LDWAAKTREI LNKAQLPDGV SFYNIYGVSL NTPFDVCYGT 360
  361 ETSPIDDLSE ICQTMPEYTY VDGDGTVPAE SAAAAQFKAV ASVGVSGSHR GLLRDERVFE 420
  421 LIQQWLGVEP KKAKRKHLRT HKVVDSG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.30103
Match: 1k8qA
Description: Gastric lipase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.866238607554457 bayes_pls_golite062009
hydrolase activity 0.52702612560045 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle