YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|269202132\|ref...
Organism:	Staphylococcus aureus subsp. aureus ED98
Length:	293 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|269202132|ref....

Description	E-value	Query Range	Subject Range
gi\|255005305 - gi\|255005305\|ref\|ZP_05143906.2\| Hsp33-like chaperonin [Staphylococcus aureus subsp. aureus Mu50-omeg... gi\|253315219 - gi\|253315219\|ref\|ZP_04838432.1\| Hsp33-like chaperonin [Staphylococcus aureus subsp. aureus str. CF-M... HSLO_STAA9 - 33 kDa chaperonin OS=Staphylococcus aureus (strain JH9) GN=hslO PE=3 SV=1 HSLO_STAA1 - 33 kDa chaperonin OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=hslO PE=3 SV=1 gi\|25308253 - pir\|\|A89818 hypothetical protein SA0470 [imported] - Staphylococcus aureus (strain N315) HSLO_STAAN - 33 kDa chaperonin OS=Staphylococcus aureus (strain N315) GN=hslO PE=1 SV=1 HSLO_STAA2 - 33 kDa chaperonin OS=Staphylococcus aureus (strain JH1) GN=hslO PE=3 SV=1 HSLO_STAAM - 33 kDa chaperonin OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=hslO PE=3 SV=1	416.0	[0..1]	[293..1]
gi\|229329365, gi... - gi\|229499781\|ref\|ZP_04393461.1\| Hsp33 protein [Geobacillus sp. Y412MC52], gi\|229329365\|gb\|EEN94919.1... gi\|221087989, gi... - gi\|221087989\|ref\|ZP_03557523.1\| Hsp33 protein [Geobacillus sp. Y412MC61], gi\|220707982\|gb\|EED63360.1... gi\|56418599, gi\|... - gi\|56418599\|ref\|YP_145917.1\| Hsp33-like chaperonin [Geobacillus kaustophilus HTA426], gi\|56378441\|db...	412.0	[0..1]	[293..1]
HSLO_GEOKA - 33 kDa chaperonin OS=Geobacillus kaustophilus (strain HTA426) GN=hslO PE=3 SV=2 HSLO_GEOKA - 33 kDa chaperonin OS=Geobacillus kaustophilus GN=hslO PE=3 SV=2	412.0	[0..4]	[293..3]
gi\|221317136 - gi\|221317136\|ref\|ZP_03598430.1\| Hsp33-like chaperonin [Bacillus subtilis subsp. subtilis str. JH642] gi\|221321399 - gi\|221321399\|ref\|ZP_03602693.1\| Hsp33-like chaperonin [Bacillus subtilis subsp. subtilis str. SMY] HSLO_BACSU - 33 kDa chaperonin OS=Bacillus subtilis GN=hslO PE=1 SV=1 gi\|221312203 - gi\|221312203\|ref\|ZP_03594008.1\| Hsp33-like chaperonin [Bacillus subtilis subsp. subtilis str. NCIB 3... HSLO_BACSU - 33 kDa chaperonin OS=Bacillus subtilis (strain 168) GN=hslO PE=1 SV=1	408.0	[0..3]	[291..1]
gi\|89100503, gi\|... - gi\|89100503\|ref\|ZP_01173364.1\| Hsp33-like chaperonin [Bacillus sp. NRRL B-14911], gi\|89084769\|gb\|EAR...	408.0	[0..3]	[292..2]
gi\|56554327, gi\|... - gi\|56554328\|pdb\|1VZY\|B Chain B, Crystal Structure Of The Bacillus Subtilis Hsp33, gi\|56554327\|pdb\|1V...	408.0	[0..3]	[291..1]
HSLO_GEOSE - 33 kDa chaperonin OS=Geobacillus stearothermophilus GN=hslO PE=3 SV=2	408.0	[0..4]	[293..3]
HSLO_STAS1 - 33 kDa chaperonin OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 2022...	407.0	[0..1]	[292..1]
gi\|238857929, gi... - gi\|238857929\|ref\|ZP_04648158.1\| chaperonin HslO [Enterococcus faecalis TUSoD Ef11], gi\|238829599\|gb\|... HSLO_ENTFA - 33 kDa chaperonin OS=Enterococcus faecalis GN=hslO PE=3 SV=1 HSLO_ENTFA - 33 kDa chaperonin OS=Enterococcus faecalis (strain ATCC 700802 / V583) GN=hslO PE=3 SV=1 gi\|227174969, gi... - gi\|227555912\|ref\|ZP_03985959.1\| heat shock protein Hsp33 [Enterococcus faecalis HH22], gi\|227174969\|... gi\|229550493, gi... - gi\|229550493\|ref\|ZP_04439218.1\| heat shock protein Hsp33 [Enterococcus faecalis ATCC 29200], gi\|2293... gi\|229307832, gi... - gi\|229546904\|ref\|ZP_04435629.1\| heat shock protein Hsp33 [Enterococcus faecalis TX1332], gi\|22930783...	403.0	[0..3]	[292..2]
HSLO_STAHJ - 33 kDa chaperonin OS=Staphylococcus haemolyticus (strain JCSC1435) GN=hslO PE=3 SV=1	400.0	[0..1]	[291..1]

Back

Predicted Domain #1

Region A:
Residues: [1-293]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHDYIVKAL AFDGEIRAYA ALTTETVQEA QTRHYTWPTA SAAMGRTMTA TAMMGAMLKG  60
   61 DQKLTVTVDG QGPIGRIIAD ANAKGEVRAY VDHPQTHFPL NEQGKLDVRR AVGTNGSIMV 120
  121 VKDVGMKDYF SGASPIVSGE LGEDFTYYYA TSEQTPSSVG LGVLVNPDNT IKAAGGFIIQ 180
  181 VMPGAKDETI SKLEKAISEM TPVSKLIEQG LTPEGLLNEI LGEDHVQILE KMPVQFECNC 240
  241 SHEKFLNAIK GLGEAEIQNM IKEDHGAEAV CHFCGNKYKY TEEELNVLLE SLA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	114.0
Match:	1vzyA
Description:	Crystal structure of the Bacillus subtilis HSP33
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.12162415753261	bayes_pls_golite062009
catalytic activity	0.647357804183697	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: