YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|269202161\|ref...
Organism:	Staphylococcus aureus subsp. aureus ED98
Length:	230 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|269202161|ref....

Description	E-value	Query Range	Subject Range
RL1_STAEQ - 50S ribosomal protein L1 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rplA PE=3 SV=1 RL1_STAEP - (Q8CTT4) 50S ribosomal protein L1 gi\|242234648, gi... - gi\|242241870\|ref\|ZP_04796315.1\| 50S ribosomal protein L1 [Staphylococcus epidermidis W23144], gi\|242... gi\|251809955, gi... - gi\|251809955\|ref\|ZP_04824428.1\| 50S ribosomal protein L1 [Staphylococcus epidermidis BCM-HMP0060], g... RL1_STAES - 50S ribosomal protein L1 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=rplA PE=3 SV=1	303.0	[0..1]	[230..1]
RL1_STAAR - 50S ribosomal protein L1 OS=Staphylococcus aureus (strain MRSA252) GN=rplA PE=3 SV=1 gi\|227557414, gi... - gi\|227557414\|ref\|ZP_03987461.1\| 50S ribosomal protein L1 [Staphylococcus aureus subsp. aureus MN8], ...	302.0	[0..1]	[229..1]
RL1_MOOTA - 50S ribosomal protein L1 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplA PE=3 SV=1	301.0	[0..1]	[226..1]
RL1_STAAN - 50S ribosomal protein L1 OS=Staphylococcus aureus (strain N315) GN=rplA PE=1 SV=1 gi\|25294922 - pir\|\|D89821 50S ribosomal protein L1 [imported] - Staphylococcus aureus (strain N315)	300.0	[0..1]	[230..1]
RL1_STAHJ - 50S ribosomal protein L1 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rplA PE=3 SV=1	299.0	[0..1]	[230..1]
gi\|48835066 - ref\|ZP_00292068.1\| COG0081: Ribosomal protein L1 [Thermobifida fusca] RL1_THEFY - 50S ribosomal protein L1 OS=Thermobifida fusca (strain YX) GN=rplA PE=3 SV=1	297.0	[0..3]	[230..2]
RL1_THET2 - 50S ribosomal protein L1 OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=rplA PE=... RL1_THETH - 50S ribosomal protein L1 OS=Thermus thermophilus GN=rplA PE=1 SV=3 gi\|2120598 - pir\|\|S66577 ribosomal protein L1 - Thermus aquaticus (fragment)	293.0	[0..1]	[228..1]
gi\|116668234, gi... - gi\|211938913\|pdb\|2JL8\|C Chain C, Insights Into Translational Termination From The Structure Of Rf2 B... RL1_THET8 - 50S ribosomal protein L1 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=rplA PE=1 SV...	293.0	[0..1]	[228..1]
gi\|227903261, gi... - gi\|227903261\|ref\|ZP_04021066.1\| 50S ribosomal protein L1 [Lactobacillus acidophilus ATCC 4796], gi\|2... RL1_LACAC - 50S ribosomal protein L1 OS=Lactobacillus acidophilus GN=rplA PE=3 SV=1 RL1_LACAC - 50S ribosomal protein L1 OS=Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM) GN=rp...	292.0	[0..1]	[229..1]
RL1_CHESB - 50S ribosomal protein L1 OS=Chelativorans sp. (strain BNC1) GN=rplA PE=3 SV=1	292.0	[0..1]	[229..1]

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Predicted Domain #1

Region A:
Residues: [1-230]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKKGKKYQE AASKVDRTQH YSVEEAIKLA KETSIANFDA SVEVAFRLGI DTRKNDQQIR  60
   61 GAVVLPNGTG KSQSVLVFAK GDKIAEAEAA GADYVGEAEY VQKIQQGWFD FDVVVATPDM 120
  121 MGEVGKLGRV LGPKGLMPNP KTGTVTMDVK KAVEEIKAGK VEYRAEKAGI VHASIGKVSF 180
  181 TDEQLIENFN TLQDVLAKAK PSSAKGTYFK SVAVTTTMGP GVKIDTASFK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	79.69897
Match:	1eg0N
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.98821526471491	bayes_pls_golite062009
structural molecule activity	9.4110731269774	bayes_pls_golite062009
binding	1.37133122073906	bayes_pls_golite062009
protein binding	0.335149649581279	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: