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View Structure Prediction Details

Protein: gi|52353712, gi|...
Organism: Oryza sativa Japonica Group
Length: 113 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|52353712, gi|....

Description E-value Query
Range
Subject
Range
gi|110765226, gi... - ref|XP_392860.1| similar to 60S acidic ribosomal protein P2 [Apis mellifera], gi|110765226|ref|XP_00...
121.0 [0..1] [113..1]

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Predicted Domain #1
Region A:
Residues: [1-113]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLIAAYLLA VLGGNTSPSA DDIKNILESV GVEANDERLE FLLSELEGKD ITEVIAAGRE  60
   61 KFASVPSGGG GGIAVAAPTA AGGGAAPAEE AKKEEKVEEK EESDDDMGFS LFD

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 35.522879
Match: PF00428.10
Description: No description for PF00428.10 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.334 0.762 translational elongation a.4.5 "Winged helix" DNA-binding domain
View Download 0.316 0.034 translational elongation a.39.1 EF-hand
View Download 0.305 0.025 translational elongation a.4.1 Homeodomain-like
View Download 0.298 N/A N/A a.39.1 EF-hand
View Download 0.286 N/A N/A a.4.1 Homeodomain-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle