YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|42561586, gi|...
Organism: Arabidopsis thaliana
Length: 241 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42561586, gi|....

Description E-value Query
Range
Subject
Range
gi|25518458, gi|... - gi|9665145|gb|AAF97329.1|AC023628_10 Similar to pathogenesis-related proteins [Arabidopsis thaliana]...
196.0 [0..25] [241..67]

Back

Predicted Domain #1
Region A:
Residues: [1-74]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELRKRKIRA PLHIFVGITF FLLQLWSGTA QINHEDSSTK PSVKNSPSAT STRLLLSPPS  60
   61 FTGNRFSFRF RWRR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [75-241]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IRRRNRVNRA SREFLIAHNL VRARVGEPPF QWDGRLAAYA RTWANQRVGD CRLVHSNGPY  60
   61 GENIFWAGKN NWSPRDIVNV WADEDKFYDV KGNTCEPQHM CGHYTQIVWR DSTKVGCASV 120
  121 DCSNGGVYAI CVYNPPGNYE GENPFGSYDD QIGLARDDPP AVIGGMA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 39.69897
Match: 1cfeA
Description: P14A, NMR, 20 STRUCTURES
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle