YRC Public Data Repository - Protein Structure Prediction

Protein:	RNP2_PYRKO
Organism:	Thermococcus kodakarensis
Length:	120 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RNP2_PYRKO.

Description	E-value	Query Range	Subject Range
RNP2_PYRFU - Ribonuclease P protein component 2 OS=Pyrococcus furiosus GN=rnp2 PE=1 SV=1 RNP2_PYRFU - Ribonuclease P protein component 2 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 /...	153.0	[0..1]	[120..1]
RNP2_PYRAB - Ribonuclease P protein component 2 OS=Pyrococcus abyssi GN=rnp2 PE=3 SV=1 RNP2_PYRAB - Ribonuclease P protein component 2 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=rnp2 PE=3 SV=1	153.0	[0..2]	[120..1]
RNP2_PYRHO - Ribonuclease P protein component 2 OS=Pyrococcus horikoshii GN=rnp2 PE=1 SV=1 RNP2_PYRHO - Ribonuclease P protein component 2 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 99...	151.0	[0..1]	[120..1]
gi\|88192154, gi\|... - gi\|88192156\|pdb\|2AV5\|E Chain E, Crystal Structure Of Pyrococcus Furiosus Pop5, An Archaeal Ribonucle...	150.0	[0..1]	[120..1]
gi\|110591097, gi... - gi\|110591098\|pdb\|2CZV\|D Chain D, Crystal Structure Of Archeal Rnase P Protein Ph1481p In Complex Wit...	148.0	[0..1]	[120..1]
POP5_BOVIN - Ribonuclease P/MRP protein subunit POP5 OS=Bos taurus GN=POP5 PE=2 SV=1	133.0	[0..11]	[120..1]
gi\|50756667 - gi\|50756667\|ref\|XP_415266.1\| PREDICTED: similar to processing of precursor 5, ribonuclease P/MRP fam...	132.0	[0..11]	[120..337]
POP5_MOUSE - Ribonuclease P/MRP protein subunit POP5 OS=Mus musculus GN=Pop5 PE=1 SV=1	130.0	[0..11]	[120..1]
POP5 - processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae) gi\|109098960 - gi\|109098960\|ref\|XP_001089950.1\| PREDICTED: similar to processing of precursor 5, ribonuclease P/MRP... gi\|114647330 - gi\|114647330\|ref\|XP_509430.2\| PREDICTED: processing of precursor 5, ribonuclease P/MRP subunit isofo...	129.0	[0..11]	[120..1]
gi\|73994750 - gi\|73994750\|ref\|XP_534710.2\| PREDICTED: similar to processing of precursor 5, ribonuclease P/MRP sub...	127.0	[0..11]	[120..1]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREKPKYLPP TLRDKNRYIA FQVIGERPFK KDEIKKAVWE ASLSALGYLG SARAKPWFIK  60
   61 FDEKSQTGIV RVDRKHVEEL RFALTMLTEI NGSKVIFRTL GVSGTIKRLK RKFLAEYGWR 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.0
Match:	2av5A
Description:	Crystal structure of Pyrococcus furiosus Pop5, an archaeal Ribonuclease P protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits