YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17549864
Organism:	Ralstonia solanacearum GMI1000
Length:	140 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17549864.

Description	E-value	Query Range	Subject Range
gi\|15965722 - gi\|15965722\|ref\|NP_386075.1\| hypothetical protein SMc04314 [Sinorhizobium meliloti 1021] gi\|15074991 - gi\|15074991\|emb\|CAC46548.1\| Hypothetical protein [Sinorhizobium meliloti 1021]	132.0	[0..1]	[131..1]
gi\|150028487, gi... - gi\|150396972\|ref\|YP_001327439.1\| 4-oxalocrotonate tautomerase [Sinorhizobium medicae WSM419], gi\|150...	128.0	[0..1]	[131..1]
gi\|27353534, gi\|... - gi\|27380370\|ref\|NP_771899.1\| hypothetical protein bll5259 [Bradyrhizobium japonicum USDA 110], gi\|27...	128.0	[0..1]	[131..1]
gi\|45517172, gi\|... - gi\|73542565\|ref\|YP_297085.1\| 4-oxalocrotonate tautomerase [Ralstonia eutropha JMP134], gi\|72119978\|g...	127.0	[0..1]	[130..1]
gi\|13476491, gi\|... - gi\|14027252\|dbj\|BAB54206.1\| mll7825 [Mesorhizobium loti MAFF303099], gi\|13476491\|ref\|NP_108061.1\| hy...	127.0	[0..1]	[131..1]
gi\|54032331, gi\|... - gi\|91787047\|ref\|YP_547999.1\| 4-oxalocrotonate tautomerase [Polaromonas sp. JS666], gi\|91696272\|gb\|AB...	125.0	[0..1]	[131..1]
gi\|206591938, gi... - gi\|207738570\|ref\|YP_002256963.1\| 4-oxalocrotonate tautomerase protein [Ralstonia solanacearum IPO160... gi\|207722588, gi... - gi\|207722588\|ref\|YP_002253024.1\| 4-oxalocrotonate tautomerase protein [Ralstonia solanacearum MolK2]... gi\|83747112, gi\|... - gi\|83747112\|ref\|ZP_00944156.1\| Hypothetical Protein RRSL_03067 [Ralstonia solanacearum UW551], gi\|83...	122.0	[0..1]	[130..1]
gi\|113869138, gi... - gi\|113869138\|ref\|YP_727627.1\| hypothetical protein H16_A3184 [Ralstonia eutropha H16], gi\|113527914\|...	122.0	[0..1]	[130..1]
gi\|91693459, gi\|... - gi\|91780799\|ref\|YP_556006.1\| hypothetical protein Bxe_C0717 [Burkholderia xenovorans LB400], gi\|9169...	120.0	[0..1]	[130..1]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPILNVKVSA RRSPEMTRKI AATLLELTSR ILGKDPNVTA IAIDYVAPED WIVGGQTLAA  60
   61 QGRQSVYFDI KVTDETNTKA EKAQYIAEAF EAFSRLLGNL HEESYIYIQD VRAASYGYGG 120
  121 KTQEYRFQHT RDVLHAPPAD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.0
Match:	2aagA
Description:	Crystal Structures of the Wild-type, Mutant-P1A and Inactivated Malonate Semialdehyde Decarboxylase: A Structural Basis for the Decarboxylase and Hydratase Activities
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.306892946511488	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: