YRC Public Data Repository - Protein Structure Prediction

Protein:	DFX_DESB2
Organism:	Desulfarculus baarsii DSM 2075
Length:	126 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DFX_DESB2.

Description	E-value	Query Range	Subject Range
gi\|93451530, gi\|... - gi\|94268618\|ref\|ZP_01291234.1\| Desulfoferrodoxin [delta proteobacterium MLMS-1], gi\|94264843\|ref\|ZP_...	206.0	[0..1]	[124..1]
gi\|67980851, gi\|... - gi\|95929752\|ref\|ZP_01312493.1\| desulfoferrodoxin [Desulfuromonas acetoxidans DSM 684], gi\|95134048\|g...	203.0	[0..1]	[125..1]
gi\|52696241, gi\|... - gi\|52696244\|pdb\|1VZI\|B Chain B, Structure Of Superoxide Reductase Bound To Ferrocyanide And Active S... gi\|52696243\|pdb\|... - Chain A, Structure Of Superoxide Reductase Bound To Ferrocyanide And Active Site Expansion Upon X-Ra...	197.0	[0..1]	[126..1]
DFX_DESVH - Desulfoferrodoxin OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=dfx ... gi\|241878479, gi... - gi\|241909146\|ref\|ZP_04793699.1\| desulfoferrodoxin [Desulfovibrio vulgaris RCH1], gi\|241878479\|gb\|EER... gi\|66409, gi\|145... - gi\|758676\|gb\|AAA64797.1\| rubredoxin oxidoreductase [Desulfovibrio vulgaris str. Hildenborough], pir\|... gi\|120601255, gi... - gi\|120601255\|ref\|YP_965655.1\| desulfoferrodoxin [Desulfovibrio vulgaris subsp. vulgaris DP4], gi\|120...	197.0	[0..1]	[125..1]
gi\|146297044, gi... - gi\|82499025\|ref\|ZP_00884477.1\| Desulfoferrodoxin, ferrous iron-binding region:Desulfoferrodoxin Dfx:...	196.0	[0..1]	[125..1]
DFX_PELCD - Desulfoferrodoxin OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=dfx PE=3 SV=1	194.0	[0..1]	[125..1]
gi\|71836900, gi\|... - gi\|71836900\|ref\|ZP_00676667.1\| Desulfoferrodoxin, ferrous iron-binding region:Desulfoferrodoxin Dfx:...	193.0	[0..1]	[125..1]
DFX_DESDE, DESR_... - Desulfoferrodoxin OS=Desulfovibrio desulfuricans GN=dfx PE=1 SV=2, (P22076) Desulfoferrodoxin (EC 1....	193.0	[0..2]	[126..1]
gi\|1020403 - gi\|1020403\|dbj\|BAA11174.1\| desulfoferrodoxin [Desulfovibrio vulgaris] DFX_DESVM - Desulfoferrodoxin OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=dfx PE=3 SV=2	191.0	[0..1]	[124..1]
gi\|71488722, gi\|... - gi\|71545360\|ref\|ZP_00666297.1\| Desulfoferrodoxin, ferrous iron-binding region:Desulfoferrodoxin Dfx:...	189.0	[0..1]	[124..1]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPERLQVYKC EVCGNIVEVL NGGIGELVCC NQDMKLMSEN TVDAAKEKHV PVIEKIDGGY  60
   61 KVKVGAVAHP MEEKHYIQWI ELLADDKCYT QFLKPGQAPE AVFLIEAAKV VAREYCNIHG 120
  121 HWKAEN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.69897
Match:	2ji2A
Description:	No description for 2ji2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits